Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq350557 82.4 5e-11 >seq350557 Length=1960230 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/233 (68%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||||||||||| ||| || ||||| |||| ||| ||||| || ||||| ||||| | Sbjct 910644 GCCGCCTCGCAGACGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAATCTGA 910703 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || | ||| |||| |||| ||||| || | || || | |||||||| || | || Sbjct 910704 CAGAGTGCGGCCATCCTCCAGCTGTTTGCCAGCGAAGATCAGCCGCTGCTGGTCAGGTGG 910763 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGT--CTGCGCTTTCC 39669 | ||| || ||||| ||||| ||| | || | | |||| ||| || || Sbjct 910764 GATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGC--TCG 910821 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGTC 39722 || || | || || || || ||||| | || || || ||||||||||| || Sbjct 910822 ACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATCTC 910874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 345815952881639