Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq28684 176 2e-38 seq350747 123 1e-22 seq350242 118 4e-21 seq348243 118 4e-21 seq365069 114 5e-20 seq350494 113 2e-19 seq350590 105 3e-17 seq349101 100 1e-15 seq350037 93.3 2e-13 seq349756 87.8 7e-12 seq350485 86.0 2e-11 seq349209 86.0 2e-11 seq350253 84.2 9e-11 seq350201 84.2 9e-11 >seq28684 Length=2226 Score = 176 bits (194), Expect = 2e-38 Identities = 360/527 (68%), Gaps = 6/527 (1%) Strand=Plus/Plus Query 451967 GGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTT 452026 || ||| |||| ||||||| | || |||||||| ||||||||||||||||| || || Sbjct 463 GGGAAAGAACTGAATAAGAGCATCAACCCTGATGAGGCTGTTGCATATGGTGCAGCTGTC 522 Query 452027 CAAGCAGCTATTCTAACAGG-TTCAGATGATGAAAAATTAGGAGATATTCTGTTAGTAGA 452085 || ||||| ||| | | || || || |||||| | ||| | ||| | | || Sbjct 523 CAGGCAGCCATTTTGTCTGGAGACAAAT-CTGAAAATGTTCAAGACTTGCTGCTGTTGGA 581 Query 452086 TGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAA 452145 ||| || ||||| || |||||| ||||||| ||||||||| | |||||| | || || Sbjct 582 TGTCACTCCTCTTTCCCTTGGAATTGAAACTGCTGGTGGAGTCATGACTGTCCTCATCAA 641 Query 452146 ACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCA 452205 || || | |||||| || ||| || || || | || ||| ||||| Sbjct 642 GCGCAATACCACCATTCCTACCAAGCAGACGCAGACTTTCACCACTTACTCTGACAACCA 701 Query 452206 ACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATAA 452265 || ||||| |||||| || | |||||| || ||||| ||||| ||||| || Sbjct 702 GCCTGGTGTGCTTATTCAGGTTTATGAAGGTGAGCGTGCCATGACCAAGGATAACAACCT 761 Query 452266 ACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGA 452325 || || | ||| || || ||| |||||| || | || |||||| ||||| Sbjct 762 GCTTGGCAAGTTTGAACTCACAGGCATACCTCCTGCCCCCCGTGGTGTTCCTCAGATTGA 821 Query 452326 AATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGA-AAAATCAT 452384 | | || | |||| ||||||| ||||| || || ||||| ||| || || || | || Sbjct 822 AGTCACTTTTGATATTGATGCCAATGGCATCCTCAATGTTTCTGCTGTGGATAAGAGCA- 880 Query 452385 CTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAAACCGTTTATCTAAAGAAGAT 452443 | |||||| |||| || ||||| || |||||||| || ||| || || ||||| Sbjct 881 CAGGAAAA-GAGAACAAGATTACCATCACTAATGACAAGGGCCGCTTGAGCAAGGAAGAC 939 Query 452444 ATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGATGA 452490 |||||| ||||| | |||||||| || | ||| | ||| ||||| Sbjct 940 ATTGAACGCATGGTTCAAGAAGCAGAGAAGTACAAAGCTGAAGATGA 986 >seq350747 Length=3474718 Score = 123 bits (136), Expect = 1e-22 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || ||||| || || || |||||||| || || || | || Sbjct 343227 ATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATTACTCTCGAGGTCGAGCCCTCG 343286 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | || || || || ||||||||||||||||||||||| || Sbjct 343287 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAG 343346 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | || || | || || ||||| ||||||||| | |||||| | || || || Sbjct 343347 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAC 343406 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || ||||| |||| || ||||| Sbjct 343407 ATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 343444 >seq350242 Length=2039022 Score = 118 bits (130), Expect = 4e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || ||||| | || || || ||||| || || || | || Sbjct 795618 ATGCAGATTTTCGTGAAGACCCTGACGAGGAAGACCATCACTCTCGAGGTCGAGCCCTCG 795559 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | || || || || ||||||||||||||||||||||| || Sbjct 795558 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAG 795499 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | ||||| | || || ||||| ||||||||| | |||||| | || || || Sbjct 795498 CAAAGACTGATTTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAC 795439 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || ||||| |||| || ||||| Sbjct 795438 ATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 795401 >seq348243 Length=269726 Score = 118 bits (130), Expect = 4e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || ||||| || || || || ||||| || || || | || Sbjct 207056 ATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAGCCCTCG 207115 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | || || || || ||||||||||||||||||||||| || Sbjct 207116 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAG 207175 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | || || | || || ||||| ||||||||| | |||||| | || || || Sbjct 207176 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAC 207235 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || ||||| |||| || ||||| Sbjct 207236 ATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 207273 >seq365069 Length=475 Score = 114 bits (126), Expect = 5e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || ||||| || || || || ||||| || || || | || Sbjct 23 ATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAGCCCTCG 82 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | || || || || ||||| ||||||||||||||||| || Sbjct 83 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTGACCAG 142 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | || || | || || ||||| ||||||||| | |||||| | || || || Sbjct 143 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAC 202 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || ||||| |||| || ||||| Sbjct 203 ATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 240 >seq350494 Length=1629883 Score = 113 bits (124), Expect = 2e-19 Identities = 156/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || ||||| || || || || ||||| || ||||| | || Sbjct 276219 ATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTTGAGCCCTCG 276160 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | || || || || ||||||||||||||||||||||| || Sbjct 276159 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAG 276100 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | || || | || || ||||| ||||||||| | ||||| || || || Sbjct 276099 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTT----GACTACAAC 276044 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || ||||| |||| || ||||| Sbjct 276043 ATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 276006 >seq350590 Length=2164919 Score = 105 bits (116), Expect = 3e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||| | || || ||||| || || || || ||| | || || || | || Sbjct 498574 ATGCAAATTTTCATGAAGACCCTGACGGGGAAGACCATCACTTTCGAGGTCGAGCCCTCG 498633 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | || || || || |||||| |||||||||||||||| || Sbjct 498634 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGTAAGGAATTCCTCCTGACCAG 498693 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | || || | || || ||||| ||||||||| | |||||| | || || || Sbjct 498694 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAC 498753 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || ||||| |||| || ||||| Sbjct 498754 ATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 498791 >seq349101 Length=1240524 Score = 100 bits (110), Expect = 1e-15 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||||| ||||||| ||||||| || || |||||||||||||| ||||| || ||||| Sbjct 617727 GTTACTCATGCAGTTGTTACTGTACCAGCATATTTCAATGATGCCCAACGCCAGGCAACC 617786 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 |||||||| ||| ||||||||| || ||||| | | || || ||||| || Sbjct 617787 AAAGATGCTGGAACTATTGCTGGATTGAATGTCATGAGGATCATCAATGAGCC 617839 >seq350037 Length=701411 Score = 93.3 bits (102), Expect = 2e-13 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 96048 ATGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAA-- 96105 ||||||| | |||||||||||| || || || ||||| ||| || | || | || Sbjct 430657 ATGCAATCTCTGGCACTAGGGGGTCATCTGGGTTTGGATCA--CATAGCAGTGAACAAAT 430714 Query 96106 GGATAAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAA 96165 ||||||||| |||||| ||| |||| || || ||| | | ||| |||||| | Sbjct 430715 GGATAAAAGAACTTTAGAAATAGTTAAAGCAGGAGACCACTGTGATCTTAGAATATCGAG 430774 Query 96166 ACAAATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTT 96225 |||||| || || | ||||||||||||||||||| ||| ||||| || || Sbjct 430775 ACAAATGCTGCCATTACTGTTAATATTTGGATGATAAATTCTTGTTGTAAATGCAACCTT 430834 Query 96226 AGGAGGCTTATATGGATAGTCTTCAGGAAAAGTAATT 96262 ||| || || | || |||||| ||||||| |||| Sbjct 430835 AGGTGGTTTGAAGGGGTAGTCTGTAGGAAAATGAATT 430871 >seq349756 Length=647341 Score = 87.8 bits (96), Expect = 7e-12 Identities = 151/218 (69%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || |||| || | | || ||||| || || || | || Sbjct 144638 ATGCAGATTTTCGTGAAGACTCTGATAGGAGGATC-ATCACTCTCGAGGTCGAGCCCTCG 144580 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | || || || || |||||||||||||||||||||| || Sbjct 144579 GATACAATAGAAAATGTAAAGGCCAAGATCCAGAATAAGGAAGGAATTCCTCCTGACCAG 144520 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | || ||| | || || ||||| ||||||||| |||||| | || | || Sbjct 144519 CAAAGACTGATCTTCACTGGCAAGCAACTAGAAGATGGACATACTTTGTCTGACTGCAAC 144460 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || ||||| |||| | ||||| Sbjct 144459 ATTCAAAAGGAGTCCACTCTTCATCTAGTGTGGAGACT 144422 >seq350485 Length=1039438 Score = 86.0 bits (94), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 391056 ATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAAC 391115 |||||||| | || |||| || || || || ||||| | || || | || |||| | Sbjct 69489 ATTTTCGTGGAGACCCTGATGGGGAAGACCATCACTCTC-AGGTCGAGCCCTCGGATACC 69547 Query 391116 ATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGT 391175 || ||| | | || || | || ||||||||||||||||||||||| || ||| | Sbjct 69548 ATAGAAAATGTAAAGGTCAAGGTCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAAAGA 69607 Query 391176 TTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGAT 391235 | || || | || || ||||| |||||||| | ||| || | || || || ||| | Sbjct 69608 CTGATCTTTGCTGGCAAGCAACTGAAAGATGGATGTACTCTGTCTGACTACAACATTCAA 69667 Query 391236 AAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||||| | || ||||| | || || ||||| Sbjct 69668 AAGGAGTCCACTCTTCATCTTGTGTTGAGACT 69699 >seq349209 Length=670755 Score = 86.0 bits (94), Expect = 2e-11 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 391056 ATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAAC 391115 |||||| | || || ||||| | || || || |||||||| | ||| | || |||| Sbjct 452576 ATTTTCATGAAGACCCTGACAGTGAAGACCATCACTCTTGAGGCTGAGCCCTCGGATACA 452517 Query 391116 ATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGT 391175 | ||| | | || || || || ||||||||||||||||||||||| || ||| | Sbjct 452516 ACAGAAAATGTAAAGGCTAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAAAGA 452457 Query 391176 TTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTG 391217 | || || | || || ||||| ||||||||| | |||||| Sbjct 452456 CTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTG 452415 >seq350253 Length=1460441 Score = 84.2 bits (92), Expect = 9e-11 Identities = 123/169 (73%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 452321 ATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAA- 452379 || ||| | || | |||| ||||||| ||||| ||||| ||||| ||| | ||||| Sbjct 970882 ATCGAAGTCACTTTTGATATTGATGCCAATGGCATTCTCAATGTCTTTGCTATGGAAAAG 970941 Query 452380 ATCATCTGGAAAATCAGAAAAA-ATTACAATTACTAATGATAAAAACCGTTTATCTAAAG 452438 | || | ||| || |||| || ||||| || |||||||| || |||||| || | Sbjct 970942 AGCA-CAGGATAAG-AGAACAAGATTACCATCACTAATGACAAGGGCCGTTTGAGCAAGG 970999 Query 452439 AAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGA 452487 | || |||||| | ||||| ||||||||||||| | ||| | ||| || Sbjct 971000 ATGACATTGAACAGATGGTTCATGAAGCAGAAAAGTACAAAGCTGAAGA 971048 >seq350201 Length=718238 Score = 84.2 bits (92), Expect = 9e-11 Identities = 150/217 (69%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 96048 ATGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAA-- 96105 ||||||| | |||||||| ||| || || || ||||| ||| || | || | || Sbjct 360670 ATGCAATCTTTGGCACTACGGGGTCATCTGGGTTTGGATCA--CATAGCAGTGAACAAAT 360727 Query 96106 GGATAAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAA 96165 |||||||||||||||| ||| ||| || || ||| | | ||| | |||| | Sbjct 360728 GGATAAAAGTACTTTAGAAATAGATAAAGCAGGAGACCACTGTGATCTTAGACTATCAAG 360787 Query 96166 ACAAATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTT 96225 |||||| || || | ||||||||||||||||||| ||| ||||| || || Sbjct 360788 ACAAATGCTGCCATTACTGTTAATATTTGGATGATAAATTCTTGTTGTAAATGCAACTTG 360847 Query 96226 AGGAGGCTTATATGGATAGTCTTCAGGAAAAGTAATT 96262 ||| | || |||| |||||| ||||||| |||| Sbjct 360848 AGGTGATTTGAATGGGTAGTCTGTAGGAAAATGAATT 360884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1966428631972164