Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_015049.1 Length=124335 Score E Sequences producing significant alignments: (Bits) Value seq260350 82.4 6e-11 >seq260350 Length=1938 Score = 82.4 bits (90), Expect = 6e-11 Identities = 166/244 (68%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||| | || || ||| | ||||| | | ||| || | | ||||| Sbjct 231 CCTCATGCTGCACACGGCACGTGTATCTCTGCTCCTCTCCAGAAGGCACCACCAGGGCTG 290 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| || | |||||||| ||||| || ||| | | | Sbjct 291 CCCACTTCTGGAAGGTTCCATCCCCTGAAGGTCTGGTCTCCACAAGCTCCATGTCCTGGG 350 Query 469 TCAGTTGCTCTGCTCCCATG-TGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTG 527 || | | ||| | | || | ||||| || | | || ||| |||| |||||||| | Sbjct 351 TCTGGTCCTC-CCCCTCACGCTGCCAGGTCAGTGAGATCTCCTCAGGGTAGAAGCCCAGG 409 Query 528 GCCCAACATTTTAGTGTTACTTGACGGTCAGGTGTTGCTTGTCTGGTCACGTGAACCTGT 587 ||||| || | || || || | |||||||| | | |||| ||||| || ||| | Sbjct 410 GCCCAGCACCTCAGGGTGACCTCACGGTCAGAGCTGGGGTGTCGCGTCACATGTGCCTTT 469 Query 588 GGAG 591 |||| Sbjct 470 GGAG 473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395968233760248