Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq349686 448 5e-121 seq350466 120 3e-22 seq348784 116 4e-21 seq348299 102 9e-17 >seq349686 Length=1138722 Score = 448 bits (496), Expect = 5e-121 Identities = 666/937 (71%), Gaps = 8/937 (1%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || || ||||||| | ||| ||||||||| | || || ||| |||||||| Sbjct 730098 TTAGAAGTCGGCATCCAAGGTAAAGGAATTCTCTG--TCGGACTTGACATCACTCCCATC 730155 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| || | ||||| || |||||||| ||||| || ||||| | ||| ||| | Sbjct 730156 CTCTGATACTCACCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTT 730215 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 |||||||| ||||||||||||| ||| | | | || | || || | || | | Sbjct 730216 TCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAGCCCAGCTCCAGCATA 730275 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 |||||||| || || | | ||| || ||||||| | |||||||| || || | Sbjct 730276 AGTCTATCTGCCACGCACTCAATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGC 730335 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGAT-ATAAT 18908 || ||||| || || || || || || || |||||||| | ||||| | |||| || || Sbjct 730336 TTCACAGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACTGCAT-TGATGATTAT 730394 Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAA 18968 | ||||| | ||| || || | || ||||| ||||||| || ||||| Sbjct 730395 TTCTTTTACTCTCTGTTCTGAAGATTTGTGCAACAGGTGTTTGAACATCAGGCAGGCAAA 730454 Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028 |||||||| | ||||||||||| || || | |||||| ||||| || | |||||||| Sbjct 730455 GTCACAATGCAAGCCCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCAT 730514 Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTC 19088 |||||||| ||| || | ||||||||| || ||||| || || |||||||| || ||||| Sbjct 730515 CAGTCCTCGTTTCTTGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAGATGCCTTC 730574 Query 19089 TACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTT 19148 ||||| ||||| || || | | ||||||||| |||| || || | |||||| Sbjct 730575 CACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTTTGTCCCCAATCCAGCG 730634 Query 19149 CAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATA 19208 || |||||||| || ||||| || ||||| ||||| ||||| || | ||| || ||| | Sbjct 730635 CAAGGCCCAATCTGCTTTCTTCTTCACACAAGGCATCGTCTCAATGGCATTGAAGAGAAA 730694 Query 19209 CATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATG 19268 | || | | |||||||| || | || || | | ||| |||||||| ||||| Sbjct 730695 TTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATG 730754 Query 19269 AATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 || ||||| || || || || || || || ||||| | || || || ||||| ||||| Sbjct 730755 TATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAACGGGCCTCAGTAATCTGAACTTC 730814 Query 19329 ACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGC 19388 | ||| | || ||||| |||||||| ||||| ||||| || |||||||| || || Sbjct 730815 TTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCTCTTGCTGCAAAGAAAGC 730874 Query 19389 TAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT-CCAATCATTAATAT 19447 | ||||| |||||||| | | || || | | || | | || ||| | | ||| | Sbjct 730875 CAGCACATGGGAAATAAAATATCTCTCCTCAG-GCTTCAGGGCTTCCCAGTGCTGAATGT 730933 Query 19448 CTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGT 19507 | || || | || || || ||| |||||||||| |||||||| ||||| |||||||| | Sbjct 730934 CCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCT 730993 Query 19508 TCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 ||| |||||| | |||| |||||||| || ||||| Sbjct 730994 GCCAAATATCATGGTATTCGATAGGAAAGATGACAAA 731030 >seq350466 Length=2871019 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||||||||| || || | |||||| ||||| || | |||||||||||||||| ||| | Sbjct 1672266 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 1672325 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || || |||||||| || ||||| ||||| ||||| | Sbjct 1672326 TGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 1672385 Query 19103 CAACTAGTCTTTCTCC 19118 | || | | |||||| Sbjct 1672386 CTACCACACGTTCTCC 1672401 Score = 105 bits (116), Expect = 7e-18 Identities = 112/146 (77%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || || ||||||| | ||| ||||||||| | || || ||| |||||||| Sbjct 1670424 TTAGAAGTCGGCATCCAAGGTAAAGGAATTCTCTG--TCGGACTTGACATCACTCCCATC 1670481 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| ||| | ||||| || |||||||| ||||| || ||||| | ||| ||| | Sbjct 1670482 CTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTT 1670541 Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755 |||||||| ||||||||||||| ||| Sbjct 1670542 TCCATAAAGTCAAATGGATTTTCTAC 1670567 >seq348784 Length=1834159 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | ||||| ||||| || | |||||||| ||||||||||| ||| Sbjct 1483990 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 1484049 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||||| |||||| ||||| || ||||| || |||||||| || ||||| || Sbjct 1484050 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCGGCAAAGGCC 1484109 Query 19105 ACTAGTCTTTCTCC 19118 || | ||||| || Sbjct 1484110 ACCACCCTTTCCCC 1484123 Score = 89.7 bits (98), Expect = 6e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732 ||||| || | ||||| ||| ||||||||||| |||||||||||||| || || |||| Sbjct 1473458 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCCTCTAAGGAAATGTTTTCC 1473517 Query 18733 ATAAAATCAAATGGATTTT 18751 ||||||||||| ||||||| Sbjct 1473518 ATAAAATCAAAGGGATTTT 1473536 >seq348299 Length=121795 Score = 102 bits (112), Expect = 9e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || | || || ||||| ||||| ||||| || || Sbjct 67439 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATTGAC 67498 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 ||||||||||| || || || ||||| || || |||||||| | |||| | ||| || Sbjct 67499 TCATTATTTCCCAATATCTGGGCAGTAGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 67558 Query 47448 TTTCTTACTCCATA 47461 |||||||| ||||| Sbjct 67559 TTTCTTACACCATA 67572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559530245328120