Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq349686 251 8e-62 seq348784 102 1e-16 seq350466 82.4 9e-11 >seq349686 Length=1138722 Score = 251 bits (278), Expect = 8e-62 Identities = 605/900 (67%), Gaps = 24/900 (3%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||| || || |||| |||| || || || || ||||| || | Sbjct 730143 CATCACTCCCATCCTCTGATACTCACCTACTC-TCTTCTCAAAGAAGTTAGTCTTCCCCT 730201 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAG--TACTACA 36988 | ||||| |||||||||||||| ||||||||||| | || | | | | | ||| | Sbjct 730202 CCAGTGAAATATTTTCCATAAAGTCAAATGGATTT--TCTACTCTGAAAACCTTGCTAAA 730259 Query 36989 TGATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTA--GTTCA 37046 | ||| || ||| ||||| || || | || ||||| | ||| | || || Sbjct 730260 GCCCAGCTCCAGCATAAGTCTATCTGCCACGCACTCAATGTACTGCTTCATCAAAGTGCA 730319 Query 37047 TAGTTTATACCAATTAGTTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTAT 37105 || || ||||| || || || || | || || ||| ||| | | || |||| | Sbjct 730320 A--TTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTGAGGAACTCCTGTT-CTATCCT 730376 Query 37106 TACAGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGG-GATATTTTAAATA-- 37162 || |||| | | ||| | | | ||| || ||| | ||| | | || | Sbjct 730377 AACTGCATTGATGATTATTT---CTTTTACTC--TCTGTTCTGAAGATTTGTGCAACAGG 730431 Query 37163 --TTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCA 37220 ||| |||| | || ||||| |||||||| || || || ||||| || || | |||| Sbjct 730432 TGTTTGAACATCAGGCAGGCAAAGTCACAATGCAAGCCCTCGTCTCTGCTAATAAGTTCA 730491 Query 37221 TTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAA 37280 || ||||| || | || ||||| | |||| ||| || | ||| ||||| | |||||| Sbjct 730492 TTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGACGCAAAA 730551 Query 37281 GATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTT 37340 || || |||||||| || ||||| ||||| ||||| ||||| | |||| || | || Sbjct 730552 GAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTA 730611 Query 37341 GAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATT 37400 | | || |||||| | ||||||||| || || ||||| || Sbjct 730612 GCTTCTTTGTCCCCAATCCAGCGCAAGGCCCAATCTGCTTTCTTCTTCACACAAGGCATC 730671 Query 37401 GTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATT 37460 || ||||| || || |||||||| | |||||| |||| | || ||||| ||||| Sbjct 730672 GTCTCAATGGCATTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATG 730731 Query 37461 AGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACAC 37520 || | ||||||||||||||| || || ||||| || || || || || ||||| ||||| Sbjct 730732 AGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAA 730791 Query 37521 CTAGCTTCAGATAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTAT 37579 | || |||| |||| ||||| || | ||||| || | ||||||||||| ||||| Sbjct 730792 CGGGCCTCAG-TAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTAT 730850 Query 37580 CCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGA 37639 ||||| || |||||||||||||| || |||| ||||||| ||| || ||| Sbjct 730851 GCCATCTCTTGCTGCAAAGAAAGCCAGCACATGGGAAATAAAATATCTCTCCTCAGGCTT 730910 Query 37640 TAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACT 37699 | || ||| | | ||| || || || | || || || ||| | |||||||| Sbjct 730911 CAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGA 730970 Query 37700 TGCCAATGCACGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAA 37759 ||| || ||||||||| ||||||||||| | || || ||||| || ||||| Sbjct 730971 AGCCTCAGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAA 731030 >seq348784 Length=1834159 Score = 102 bits (112), Expect = 1e-16 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | ||||| ||||| || | ||| ||||| | |||||||| | Sbjct 1483988 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCT 1484047 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| ||||| || ||||||||||| || |||||||| ||||| || || ||||| | Sbjct 1484048 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCGGCAAAGG 1484107 Query 37318 CTAC 37321 | || Sbjct 1484108 CCAC 1484111 >seq350466 Length=2871019 Score = 82.4 bits (90), Expect = 9e-11 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||| || || |||| |||| || || || || ||||| || | Sbjct 1670469 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTCCCCT 1670527 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | ||||| |||||||||||||| ||||||||||| Sbjct 1670528 CCAGTGAAATATTTTCCATAAAGTCAAATGGATT 1670561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589599672547320