Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq348463 91.5 1e-13 seq350759 87.8 1e-12 seq350074 82.4 6e-11 >seq348463 Length=257100 Score = 91.5 bits (100), Expect = 1e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || || ||||| |||| || || ||||| | Sbjct 8621 ATGAGCTCCCTTTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTT 8680 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| |||||| || || ||||||||||| ||||| ||| |||| ||||||| || Sbjct 8681 TAAAGGTCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTAACCATAATCACCAAATT 8740 Query 112200 CTGCTTGCCT 112209 ||| || ||| Sbjct 8741 CTGTTTACCT 8750 >seq350759 Length=3492976 Score = 87.8 bits (96), Expect = 1e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| || || || ||||||||||||||||| || || || || || | || Sbjct 2678607 CATATCTTTGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCTAAATC 2678548 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 || || | |||| ||||||| ||||| ||||||| ||| |||||||| || Sbjct 2678547 CCCTTCAGCTCTGTCGGAGAAGCCCAGGCCATCCAAGAAGTCTCGGGACCCGTTGGCATC 2678488 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 ||| || || || ||||| ||||| || || | ||| ||||| || Sbjct 2678487 CCAAATTTTCACTCCCTTGGAAGAGAGTTCCTTAGCGTTGGTGGATCC 2678440 >seq350074 Length=3010838 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || || || ||||| |||| || || |||| | | ||||| |||||| || || Sbjct 1920418 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTTCTTTAAAGGTCGATTCTTCTCTGGA 1920477 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| ||||| |||||||| ||||||| ||||| || ||| Sbjct 1920478 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 1920525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406790014751459