Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq349686 219 8e-52 seq346888 172 1e-37 seq349749 132 9e-26 seq349015 98.7 2e-15 seq348299 86.0 1e-11 >seq349686 Length=1138722 Score = 219 bits (242), Expect = 8e-52 Identities = 562/846 (66%), Gaps = 21/846 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || || ||||| |||||||||||||| ||||||||||||| || || || || Sbjct 730158 CTGATACTCACCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTC 730217 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTAT-ACACCCGTG-TCAGGCCCATCTGTTCCAGC 47956 ||| ||| || || || | | | | | | || || | | ||||| || ||||| Sbjct 730218 CATAAAGTCAAATGGATTT--TCTACTCTGAAAACCTTGCTAAAGCCCAGCT---CCAGC 730272 Query 47957 AGGTG---ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATG 48013 | | ||| || ||| |||| ||||| | ||| | ||| ||||| || ||| Sbjct 730273 ATAAGTCTATCTGCCACGCACTCAATGTACTGCTTCATCAAAGTGCAATTCATCCCAATG 730332 Query 48014 AGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACA 48073 || ||| |||| |||| ||||| ||||||| |||||| || || | | Sbjct 730333 AGCTTCACAGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACTGCATTGATGATT 730392 Query 48074 ATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAG 48133 || | || || | ||||| | ||||| |||||| ||| | | || |||| Sbjct 730393 ATTTCTTTTACTCTCTGTTCTGAAGATTTGTGCAACAGGTGTTTGA---ACATCAGGCAG 730449 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 |||||||| | |||||||| ||||| | ||| || || | ||||| || ||| ||| Sbjct 730450 GCAAAGTCACAATGCAAGCCCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCA 730509 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||| | || | | ||||||||||| || | ||| ||||| || || ||||||||| Sbjct 730510 GGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAGATG 730569 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313 || |||||||| || || || | | ||||| | | ||| | ||||| ||| Sbjct 730570 CCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTTTGTCCCCAATC 730629 Query 48314 CAG-GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAA 48372 ||| | ||| ||||| ||||| |||||||| | || ||||||||||| ||||| ||| Sbjct 730630 CAGCGCAAG-GCCCAATCTGCTTTCTTCTTCACACAAGGCATCGTCTCAATGGCATTGAA 730688 Query 48373 GAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACAT 48429 ||| | | || | || || || || | |||| || | ||||| Sbjct 730689 GAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACT---ATACAT 730745 Query 48430 CTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACAC 48489 ||||| || | || || || || || ||||| || ||||| | ||||||| | Sbjct 730746 TTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAACGGGCCTCAGTAAT 730805 Query 48490 CTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGC 48549 ||| |||||| | || | ||||| || || ||||| ||||| |||||| || || Sbjct 730806 CTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCTCTTGCTGC 730865 Query 48550 AAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCC 48609 |||||| || || ||||| || |||| | ||| | | | || || | |||| Sbjct 730866 AAAGAAAGCCAGCACATGGGAAATAAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTG 730925 Query 48610 CTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTT 48669 ||| | ||| ||| |||||||| || || | ||||| ||||| || ||||| || Sbjct 730926 CTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTT 730985 Query 48670 GTACAT 48675 ||||| Sbjct 730986 ATACAT 730991 >seq346888 Length=307520 Score = 172 bits (190), Expect = 1e-37 Identities = 184/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| | || ||||| | || | ||| || ||||| ||||||||| ||||||||||| Sbjct 162639 AGCAGTTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACCTGC 162698 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| |||| | || || ||||||| || ||||| || | |||||| |||||| Sbjct 162699 TCCCGGAGAAGGCCGGCAGTGCTGGACAGCCCCGCGTTCTCGGCCTTGAGTGTCTTCACC 162758 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 162759 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGC 162818 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 ||||| || || | ||| || || | |||||||| |||||||| ||||| | ||| || Sbjct 162819 CGGTTTCGCAGCCGCTTGCGCTCTACTTTGATGCGCTCCTGGTCTTCCATATTGATGGGG 162878 Query 241625 GAC 241627 ||| Sbjct 162879 GAC 162881 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/115 (77%), Gaps = 8/115 (7%) Strand=Plus/Plus Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985 |||||||||| ||||||||| | ||||| |||| | || || ||||||| ||||||| Sbjct 162676 TCTGTTTGAGCTGGGCCACCTGCTCCCGGAGAAGGCCGGCAGTGCTGGACAGCCCCGCGT 162735 Query 238986 TATCAGACTTGAG--------CATTCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032 | || | |||||| | || |||||||| ||||||||||| |||||||| Sbjct 162736 TCTCGGCCTTGAGTGTCTTCACCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTT 162790 >seq349749 Length=2391872 Score = 132 bits (146), Expect = 9e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||||| ||| ||||| || |||||||| || ||||| | | ||| || | ||| Sbjct 1733848 AGGACCTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCTGTGGACGCCAGC 1733907 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | ||||||| ||||||||| ||||| || |||| |||||| ||||| Sbjct 1733908 TCCGTGTTCTGGCTCTTGAGCGTCTTCACTTTTTCCTCGAGGCGCGAGATGCGCTCCAGC 1733967 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| |||||| |||| ||| || | |||||| || || | ||| || || ||||| Sbjct 1733968 TTGCGCTTGCGGCACTTGGAGGCAGCGATGCGGTTGCGCAGCCGCTTGCGCTCTGCCTTA 1734027 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| || || ||||||||||| || ||| Sbjct 1734028 ATGCGCTCTTGCGTGTCCATGTCGATGGGCGAC 1734060 >seq349015 Length=4355252 Score = 98.7 bits (108), Expect = 2e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||||||||| | ||||| || | ||||| |||| ||| Sbjct 2330348 TTCACTTTTTCCTCCAGCCGCGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTGGAGGCA 2330407 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| || |||||| |||||||||| Sbjct 2330408 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGGGACTCCATGTCG 2330467 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 2330468 ATGGGGGAC 2330476 >seq348299 Length=121795 Score = 86.0 bits (94), Expect = 1e-11 Identities = 95/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 || ||||| | || || |||||||||||||||||| |||||| |||| |||||| ||| Sbjct 75343 GTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAAGTTCTGCTGG 75402 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| || || | || ||||| ||||||||||| || |||| || |||||| ||| Sbjct 75403 -TTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATATATGGGGTACCTGTCTCTGTCTG 75461 Query 213647 GGAC 213650 ||| Sbjct 75462 AGAC 75465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927259591230720