Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq349686 165 2e-35 seq350466 100 5e-16 seq348784 89.7 1e-12 >seq349686 Length=1138722 Score = 165 bits (182), Expect = 2e-35 Identities = 558/862 (65%), Gaps = 31/862 (4%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 ||||| ||| ||||||| ||||| ||| | || ||||| || || ||| | || Sbjct 731003 GATATTTGGCAGATGTATAAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAGGAGGTGGAC 730944 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCT--ATCCAAAGACGAGCAGCATTTTCTCA 25591 || |||||||||| | |||| | || || | || || ||| ||||| | Sbjct 730943 CTTTCCAAGGACATTCAGCACTGGGAAGCCCTGAAGCCTGAGGAGAGAT--ATTTTATTT 730886 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 | ||| |||| ||||||||||| ||||| ||||| || || || || ||| Sbjct 730885 CCCATGTGCTGGCTTTCTTTGCAGCAAGAGATGGCATAGTAAATGAAAACTTGGTGGAGC 730826 Query 25652 GATTCACCAGGGAAGTGCAG--TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGC 25709 | || | | ||||| ||| ||| |||||| |||||||| || ||||| || || Sbjct 730825 GGTTTAGCCAAGAAGTTCAGATTACT--GAGGCCCGTTGTTTCTATGGCTTCCAAATTGC 730768 Query 25710 CATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGA 25766 ||| ||||| | || ||||| ||||| | || || || || ||||||| ||| Sbjct 730767 CATGGAAAACATACATTCTGAAATGTAT---AGTCTCCTCATTGACACTTACATTAAAGA 730711 Query 25767 CGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAA 25826 | || || || || || |||||| ||| || || | | |||| ||| Sbjct 730710 TTCCAAAGAAAGGGAATTTCTCTTCAATGCCATTGAGACGATGCCTTGTGTGAAGAAGAA 730651 Query 25827 GGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGC-GCTACGTTTGGCGAGCGGCTGG 25885 || |||||| || ||||| | || || ||||| | ||| || || ||| Sbjct 730650 AGCAGATTGGGCCTTGCGCTGGATTGGG-GACAAAGAAGCTACATATGGAGAACGTGTGG 730592 Query 25886 TAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGC 25945 ||||||||||||| ||||| |||||||| || |||||| |||||| | || ||||||| Sbjct 730591 TAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCGATATTCTGGC 730532 Query 25946 TCAAGCAGAAGGGGACC-ATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGAC 26004 ||||| | | | |||| ||||| || || |||||||| || || || ||||| ||| Sbjct 730531 TCAAGAA-ACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAGAC 730473 Query 26005 GAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCT 26064 ||||| | || | || |||||||||||| | | || ||| || | |||||| || Sbjct 730472 GAGGGCTTGCATTGTGACTTTGCCTGCCTGATGTTCA---AACACCTGTTGCACAAATCT 730416 Query 26065 TCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNN 26124 || || ||| || | || |||| | || || ||| || ||||||| | Sbjct 730415 TCAGAACAGAGAGTAAAAGAAATAATCATCAATGCAGTTAGGATAGAACAGGAGTTCCTC 730356 Query 26125 NNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATT 26184 | || ||||| || | |||| || |||||| Sbjct 730355 ACGGAGGCCCTGCCTGTGAAGCTCATTGGGATGAATTGCACTTTGATGAAGCAGTACATT 730296 Query 26185 GAGTATGTGGCCGA---CCATCTGCTGTGCCAGCTGGG-ACTCGCCAGACTCT-ACAGTA 26239 |||| ||||| || | | ||||| ||||||| | || || | | | |||| Sbjct 730295 GAGTGCGTGGCAGATAGACTTATGCTG---GAGCTGGGCTTTAGCAAGGTTTTCAGAGTA 730239 Query 26240 CGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTG 26299 || || || |||||||||||||| || || |||| |||||||| |||||||||| Sbjct 730238 --GAAAATCCATTTGACTTTATGGAAAATATTTCACTGGAGGGGAAGACTAACTTCTTTG 730181 Query 26300 AAAAGAGGGTCGGCGACTATCA 26321 | ||||| || || || ||||| Sbjct 730180 AGAAGAGAGTAGGTGAGTATCA 730159 >seq350466 Length=2871019 Score = 100 bits (110), Expect = 5e-16 Identities = 100/127 (79%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||||||||||||||| ||||| |||||||| || |||||| |||||| | || |||| Sbjct 1672391 TGGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCGATATTCT 1672332 Query 25943 GGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGG 26001 |||||||| | | | |||| ||||| || || |||||||| || || || ||||| Sbjct 1672331 GGCTCAAG-AAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGA 1672273 Query 26002 GACGAGG 26008 ||||||| Sbjct 1672272 GACGAGG 1672266 >seq348784 Length=1834159 Score = 89.7 bits (98), Expect = 1e-12 Identities = 98/128 (77%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 25880 GGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCT 25939 || |||| |||||||| ||||| || || || || ||| || || ||||| || || | Sbjct 1484116 GGGTGGTGGCCTTTGCCGCTGTAGAAGGAATTTTCTTCTCGGGATCTTTTGCTGCTATAT 1484057 Query 25940 TCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGC 25998 ||||||| ||| | ||| |||| |||||| || || |||||||| |||||||||||| Sbjct 1484056 TCTGGCTAAAGAA-AAGAGGACTCATGCCTGGACTCACTTTTTCCAATGAGCTCATCAGC 1483998 Query 25999 AGGGACGA 26006 || || || Sbjct 1483997 AGAGATGA 1483990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 924583921859520