Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq350178 358 8e-94 seq350482 167 3e-36 seq348549 98.7 1e-15 >seq350178 Length=1026393 Score = 358 bits (396), Expect = 8e-94 Identities = 676/985 (69%), Gaps = 11/985 (1%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| ||||||| ||| |||| ||| || | ||||| ||| ||||||||| || || Sbjct 569534 CAGATGCTCGTCCAAACACTGGATGGCAAAGAGGTCAATGTCCGTGTCGAATTTGTTGGC 569593 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| ||||| ||| | || ||||| || ||| || | ||||| ||||| || Sbjct 569594 AAACAAGTGGTGCACGTGCAACAG---CCAGTTCAAGTCACCAGCTCCGAAAACGCACAC 569650 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 || || | ||| |||||| |||| |||||||| | || || || | ||||| ||||| Sbjct 569651 AGAGCGCACGTGGACGCCGCTGCACGGCGGGTAGGGGGCGCCCTTGGAAACGTCTCCTTC 569710 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 |||||||||| || ||||||||||| ||||| |||||||| || |||| || || | Sbjct 569711 AAAGTACTGCCATTTAACAAACCTGGCAATCGCTTGCATGTCAGACATGTCATACTTATG 569770 Query 160292 -CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTT 160350 | | ||| || | | | |||| | |||| || | ||| | |||||||| || | | Sbjct 569771 GCTTAAGGACAATGACCCTGGGA-CTTCGGGGATCCTCTGAATAGTGGCCCAGAGATACT 569829 Query 160351 CGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCA 160410 |||| |||||||| ||||| || | ||| ||||| |||| | ||| || | | | Sbjct 569830 CGTCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGGATATTTTGGTTCTGGA 569889 Query 160411 GAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTA 160470 | |||| || || | | || ||||| || || ||||| || || | ||| Sbjct 569890 GCACGTACTCCACATACTCCTTACTGACCACAAAATAGGCACTGCCTGAAAACAGAGGTG 569949 Query 160471 TGGGTATAGGCGGCGTGTCTTT-GTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGC 160529 | | ||| || ||| ||| ||| || |||| | || | ||| | ||| | Sbjct 569950 TTTCAAGAGGTGGA-TGTATTTTGTCAGTCCCCATGTTTGTCAGCTTTCCATCCACGACT 570008 Query 160530 GCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTG 160589 | | |||| |||||||| | |||| || | |||||| || || ||||| || Sbjct 570009 TCATAATGCTTTTTCCACCTTTCTTTCTTATGGGATGGCATTTTCTCTGTTTCTAGGTTG 570068 Query 160590 TTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAG 160649 || | || | | ||||||| | |||| || || ||||| || || | ||||| Sbjct 570069 TTCTCGCCCATCAACAGCTTCAGCTTCCTGACAATTTCCAGGTTGGTTTTAATAGGAAAA 570128 Query 160650 TCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTC 160709 || ||||||| | ||||||| ||||||||| || ||| | || |||||| | Sbjct 570129 TCCATACCGCAGAGATTTATCAGGTACTTCCAGCCTGCATTCATCTGGTAGAGGTCCTGC 570188 Query 160710 ATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTA 160769 ||||| |||| || ||||| || ||||||||||| || ||||| ||| |||| || | | Sbjct 570189 ATGCAGTTAAGGTCAGCCTGAACCCGGCTCCAGGACGCATACACCACGCTCTCCAGCTGA 570248 Query 160770 CTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAG--AAAGAACA 160827 ||||| |||||||| ||| ||| || || ||| | ||| || | ||| ||| | | Sbjct 570249 CTGGCGACAAAGACATTACTGAAGCAGGATGCGA-TGCCAACAGCTGCAGCCAAAAAGGA 570307 Query 160828 TCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCC 160887 | || || | |||| |||||||| | ||||| | ||||||||| || ||||||| Sbjct 570308 T-TTCTCTGATTTTCCATCCACGTGAATACAATAGAAATTCTGAGGCATATATATGGCCC 570366 Query 160888 TGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAA 160947 | || | ||| || | ||| || || || ||||| | ||| ||||| || ||||| |||| Sbjct 570367 TCAGGAGCCTGTCAAGCATTTCGATTTTGTGATGAACCACTATAGAATATGCTATTGGAA 570426 Query 160948 ACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAAT 161007 | || | ||| || ||| || | | || | || || ||| |||| || ||| || Sbjct 570427 ATTCCGCCTCTTCTTTACTAAGTGGTTCTGTAATATATTTGCGCTTCTTAATGAAAGAAG 570486 Query 161008 CACAATCCCGCGTCATGTTGATATA 161032 ||||||| | |||||||| || || Sbjct 570487 CACAATCACCAGTCATGTTTATGTA 570511 >seq350482 Length=687177 Score = 167 bits (184), Expect = 3e-36 Identities = 227/317 (72%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 168153 AGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATG 168212 ||||| | ||| | | |||| || ||||| || || || || || || ||||||||| || Sbjct 42418 AGAGTGAGGCAGGCTATTCCTGAGATCTTTCCAGAACCAAAGGTATTAAAGAGGCACTTG 42359 Query 168213 AAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCC 168272 | || | || || |||| |||||||||||| || || | |||||||| ||| ||| Sbjct 42358 TAACACGCCTCATCTTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCATGAGTCCC 42299 Query 168273 AACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCG 168332 | ||| || ||||| | || || || | ||| || |||||||| || ||||||||| Sbjct 42298 AGCTGGGTGATGTTTATCTTGTCCTTGTAGGCAGGCTGGACTACAACCCCATGGTTCTCG 42239 Query 168333 CTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGA 168392 ||| ||||| |||||| || ||||| ||||| || || ||||| || || |||| | Sbjct 42238 CTGTAGGTGATCATGTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAATCAAA 42179 Query 168393 ACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGC 168452 || || | | ||||| || ||||| | ||||| || ||||||||||| ||| Sbjct 42178 ACTTCCTGGGGATTTTGCAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAGCAGCCCTCTT 42119 Query 168453 TCATCTTGAGTTACGAC 168469 |||| || || || || Sbjct 42118 ACATCCTGGGTCACCAC 42102 Score = 111 bits (122), Expect = 2e-19 Identities = 159/221 (72%), Gaps = 5/221 (2%) Strand=Plus/Minus Query 167883 GTTTGCC-GTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTT 167941 |||| || ||| ||| || ||||| |||| ||||| |||| ||| ||||| || || Sbjct 45080 GTTTCCCTGTA-GTCGGTCACAGTCCCCAGGTGTAGCACCTGGCAGATCACATCC---TT 45025 Query 167942 TCCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATT 168001 || || || |||| || ||||| | || | ||||| || ||| ||| |||||||| Sbjct 45024 CCCCACCTGTGTCTTGGGGTCTTTGATCTGGAGGATGCTGGTGACAGATGTTGTTCCATT 44965 Query 168002 GCGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATAT 168061 | | ||| | ||| | | || ||||||||||||||||| || ||||||||| | || Sbjct 44964 GGGGTGTGAGACGATCTCGGTACTGTTCTCAATCCCTGACCCAAAGACCTTCCAGGAGAT 44905 Query 168062 TACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 | ||| || || || || | |||||||| || | ||||| Sbjct 44904 CATAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGACATTTA 44864 >seq348549 Length=97943 Score = 98.7 bits (108), Expect = 1e-15 Identities = 168/244 (69%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 176182 TCCATTGAAAGTATGTGTTGTAGATTGTGTTGTTTGTATCTAGTATATGTAGATATTTTA 176241 |||| | |||||| | ||| | | | |||||| | |||| | | ||||| || Sbjct 33186 TCCAGTTAAAGTAACTAAGGTATAATTTATTGTTTTTGTCTACTTCCTTCAGATACTTAG 33127 Query 176242 CTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGTGGAATGTAGT 176301 |||| |||| || |||| |||||| | ||||| || |||| | || |||||| || | Sbjct 33126 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 33067 Query 176302 TTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCTAATAATGAGC 176361 | ||||| |||| || || || || ||||| | || || | | || | || | Sbjct 33066 TCTCATAGTTTTCCCTAGATGGCCCCAAAACAACAGGCACAGAGCCAGCCAGAAAAGCAT 33007 Query 176362 GGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCTAAATAGAACT 176421 ||||| |||||||| |||||| || |||| |||||||||||||| | | ||| || | Sbjct 33006 TGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAAAGATAAAATT 32947 Query 176422 TACA 176425 | || Sbjct 32946 TGCA 32943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574571329579080