Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq348922 84.2 3e-11 >seq348922 Length=864472 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 48074 CACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCT 48133 |||| ||||| || || || |||||||| |||||||| |||| || |||||||||||| Sbjct 584394 CACCGTAAGGGGAGCGCGGGTAGAAAGGCGTGGTCTCCTTCTGAGGTATCTCTTGCACCT 584335 Query 48134 TACCATAAAGTTCACTGGTGGATGCTTGATAGATACGAACC 48174 | || || || ||||| || || ||||| |||| || ||| Sbjct 584334 TCCCGTAGAGCTCACTCGTCGAGGCTTGGTAGAACCGCACC 584294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 662441585857560