Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq348299 95.1 1e-14 seq350466 86.0 7e-12 seq349686 86.0 7e-12 >seq348299 Length=121795 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 75896 TCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGT 75955 || ||||| ||||| || || ||||||||||| ||||| ||| | ||||| |||||| Sbjct 75464 TCTCAGACAGAGACAGGTACCCCATATATGCTCTACAAAGATTCCTGTAATCGGAAGAGC 75405 Query 75956 AACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTAC 76015 ||||| |||| |||||||| ||||| || || || ||||| ||||| ||||||| Sbjct 75404 AACCAGCAGAACTTGGGAACCATCAAATGCAGCAACCTGTGCACAGAAATAGTAGAGTAT 75345 Query 76016 ACAGATAAGGATGAG 76030 || || |||||| Sbjct 75344 ACCAGCAAAGATGAG 75330 >seq350466 Length=2871019 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 65443 AATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGAAG 65502 ||||||||||||||||||||||| ||| || || |||||||| ||||||||||||||| Sbjct 1670561 AATCCATTTGACTTTATGGAAAATATTTCACTGGAGGGGAAGACTAACTTCTTTGAGAAG 1670502 Query 65503 CGAGTTGGGGACTAT 65517 |||| || || ||| Sbjct 1670501 AGAGTAGGCGAGTAT 1670487 >seq349686 Length=1138722 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 65443 AATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGAAG 65502 ||||||||||||||||||||||| ||| || || |||||||| ||||||||||||||| Sbjct 730235 AATCCATTTGACTTTATGGAAAATATTTCACTGGAGGGGAAGACTAACTTCTTTGAGAAG 730176 Query 65503 CGAGTTGGGGACTAT 65517 |||| || || ||| Sbjct 730175 AGAGTAGGTGAGTAT 730161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593832963731040