Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq349686 138 2e-27 seq365069 87.8 3e-12 seq350466 86.0 9e-12 >seq349686 Length=1138722 Score = 138 bits (152), Expect = 2e-27 Identities = 382/581 (66%), Gaps = 12/581 (2%) Strand=Plus/Plus Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 || ||||| ||| || || || || |||||| || | ||| || |||||| | Sbjct 730447 CAGGCAAAGTCACAATGCAAGCCCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGG 730506 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 || ||||| | |||| ||| || ||||| |||||||| || ||| || |||||||| Sbjct 730507 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAG 730566 Query 18278 ATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTA--TTTATTGCTC 18334 || || || || ||| || || |||| | | ||| || | |||| || ||| | Sbjct 730567 ATGCCTTCCACTGCA-GCAAAGGCTACCACACGTTCTCCATA--TGTAGCTTCTTTGTCC 730623 Query 18335 AGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCA 18394 ||||| ||||| ||| ||| | ||| || || |||| || ||| Sbjct 730624 CCAATCCAGCGCAAGGCCCAATCTGCTTTCTTCTTCACACAAGGCATCGTCTCAATGGCA 730683 Query 18395 TTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATAC 18454 || || | | || |||||||||||||||| || |||||||| || | | | |||| Sbjct 730684 TTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATAC 730743 Query 18455 ATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGA 18514 ||||||||||||||| ||||||| || || || || | ||| || | | ||||| | | Sbjct 730744 ATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAACGGGCCTCAGTA 730803 Query 18515 TATTGAA--TC-TCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCA 18571 |||| || | ||| ||| | || ||||| || ||||| ||||| || || Sbjct 730804 ATCTGAACTTCTTGGCT---AAACCGCTCCACCAAGTTTTCATTTACTATGCCATCTCTT 730860 Query 18572 GATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTC 18631 | ||| || || |||| |||| ||| |||| | | || | | ||| || | | Sbjct 730861 GCTGCAAAGAAAGCCAGCACATGGGAAATAAAATATCTCTCCTCAGGCTTCAGGGCTTCC 730920 Query 18632 CATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCC 18691 || | | || || || || || || || || || | ||||||||| || | || || Sbjct 730921 CAGTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCT 730980 Query 18692 TGTTTGTACATTTTATAAATATCTTCATGTTGTATAGGAAA 18732 | || ||||| | ||||||| | | || |||||||| Sbjct 730981 TTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAA 731021 >seq365069 Length=475 Score = 87.8 bits (96), Expect = 3e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||||| || || | || || |||| || || || || || | || ||||| Sbjct 20 AAGATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAGCCC 79 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| || ||| || || || || || ||||||||||| || ||||| || Sbjct 80 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTGAC 139 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || |||||| |||| | ||| || ||||| || |||||| | ||||| || || || Sbjct 140 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 199 Query 156000 AATATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGA 156038 || || || ||| ||| | || |||||| ||||||| ||| Sbjct 200 AACAT-TCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGA 238 >seq350466 Length=2871019 Score = 86.0 bits (94), Expect = 9e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 18411 TTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGC 18470 |||||||||||||||| || |||||||| || | | | ||||||||||||||||||| Sbjct 1673923 TTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGT 1673982 Query 18471 TTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGG 18512 ||||||| || || || || | ||| || | | ||||||| Sbjct 1673983 TTTCCATGGCAATTTGGAAGCCATAGAAACAACGGGCCTCGG 1674024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 728514692722800