Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq365069 122 2e-22 seq350747 122 2e-22 seq348243 116 7e-21 seq350590 107 4e-18 seq349183 102 2e-16 seq350494 100 6e-16 seq349209 87.8 4e-12 >seq365069 Length=475 Score = 122 bits (134), Expect = 2e-22 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGA 192368 ||||| | ||| | || |||| ||| | ||| | ||| ||| || || || || ||||| Sbjct 249 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 191 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || ||| |||| |||| ||| || ||||||||||| | ||| || || ||||| || Sbjct 190 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 131 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||||||||| || || || |||||||| ||| | ||| || | || || Sbjct 130 AATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGAC 71 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||||| ||||| || || || | || || | || |||||||| || Sbjct 70 CTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATCTT 20 >seq350747 Length=3474718 Score = 122 bits (134), Expect = 2e-22 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGA 192368 ||||| | ||| | || |||| ||| | ||| | ||| ||| || || || || ||||| Sbjct 343453 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 343395 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || ||| |||| |||| ||| || ||||||||||| | ||| || || ||||| || Sbjct 343394 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 343335 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| ||||| || || || |||||||| ||| | ||| || | || || Sbjct 343334 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGAC 343275 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||||||||||| || || || | || || | || |||||||| || Sbjct 343274 CTCGAGAGTAATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATCTT 343224 >seq348243 Length=269726 Score = 116 bits (128), Expect = 7e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGA 192368 ||||| | ||| | || |||| ||| | ||| | ||| ||| || || || || ||||| Sbjct 207282 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 207224 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || ||| |||| |||| ||| || ||||||||||| | ||| || || ||||| || Sbjct 207223 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 207164 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| ||||| || || || |||||||| ||| | ||| || | || || Sbjct 207163 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGAC 207104 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||||| ||||| || || || | || || | || |||||||| || Sbjct 207103 CTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATCTT 207053 >seq350590 Length=2164919 Score = 107 bits (118), Expect = 4e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGA 192368 ||||| | ||| | || |||| ||| | ||| | ||| ||| || || || || ||||| Sbjct 498800 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 498742 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || ||| |||| |||| ||| || ||||||||||| | ||| || || ||||| || Sbjct 498741 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 498682 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||||||| ||||| || || || |||||||| ||| | ||| || | || || Sbjct 498681 AATTCCTTACTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGAC 498622 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || | ||| ||||| || || || | || || || || || ||||| || Sbjct 498621 CTCGAAAGTGATGGTCTTCCCCGTCAGGGTCTTCATGAAAATTTGCATCTT 498571 >seq349183 Length=1390819 Score = 102 bits (112), Expect = 2e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| || || | || | || | ||| | |||||| ||| || || ||| Sbjct 1325143 ATCCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCA 1325202 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| ||||| || |||||||| | ||||| || || || Sbjct 1325203 GACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGG 1325262 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| |||||||| || || ||||| || | || | || Sbjct 1325263 GGGATGCCTTCTTTTTCTTGTATCTTCCCCTTGACATTCTCGATGGTGTCACTGGGCTCC 1325322 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || ||||| |||||||||||||| | || || | ||| ||||||||| Sbjct 1325323 ACCTCCAGAGTGATGGTTTTACCAGTGAGGGTCTTCACAAAGATCTGCATT 1325373 >seq350494 Length=1629883 Score = 100 bits (110), Expect = 6e-16 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 192311 CACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGAT 192369 |||| | ||| | || |||| ||| | ||| | ||| ||| || || || || ||| | Sbjct 275998 CACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAAA- 276055 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || ||| |||| |||| ||| || ||||||||||| | ||| || || ||||| || Sbjct 276056 ---GTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 276112 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 |||||||| ||||| || || || |||||||| ||| | ||| || | || || Sbjct 276113 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCAACC 276172 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||||| ||||| || || || | || || | || |||||||| || Sbjct 276173 TCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATCTT 276222 >seq349209 Length=670755 Score = 87.8 bits (96), Expect = 4e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 ||||| || || | | |||| |||| ||| || ||||||||||| | ||| || || ||| Sbjct 452410 TCAGACAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCA 452469 Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGAT 192483 || || |||||||| ||||| || || ||| |||||||| | | | ||| || | Sbjct 452470 GGAGGAATTCCTTCCTTATCCTGGATCTTAGCCTTTACATTTTCTGTTGTATCCGAGGGC 452529 Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || | || ||||| ||||| || | || | || || || || |||||| Sbjct 452530 TCAGCCTCAAGAGTGATGGTCTTCACTGTCAGGGTCTTCATGAAAATCTGC 452580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 979851004882050