Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq365069 127 4e-24 seq350747 127 4e-24 seq350242 127 4e-24 seq349183 84.2 4e-11 >seq365069 Length=475 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||| | ||||| || |||| ||| | ||| | ||| || ||| || || || || Sbjct 249 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 190 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 |||| ||| | || |||| ||| || |||||||| || | ||| || |||||||| || Sbjct 189 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 130 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 |||||||||||||| || || || |||||||| ||| ||||| || | || || Sbjct 129 ATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGACC 70 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || ||||| ||||| || || || | || || | ||| |||||||| || Sbjct 69 TCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATCTGCATCTT 20 >seq350747 Length=3474718 Score = 127 bits (140), Expect = 4e-24 Identities = 177/248 (71%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 171825 CTTTTTAGTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTA 171884 ||| || |||| || ||||| | ||||| || |||| ||| | ||| | ||| || Sbjct 343471 CTTCTTCTTTTCTTAGCGCCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTT 343412 Query 171885 GAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAAT 171944 ||| || || || || |||| ||| | || |||| ||| || |||||||| || | | Sbjct 343411 TGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGT 343352 Query 171945 CTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATA 172004 || || |||||||| || |||||||| ||||| || || || |||||||| ||| Sbjct 343351 CTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATT 343292 Query 172005 GTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATC 172064 ||||| || | || || || ||||||||||| || || || | || || | ||| ||| Sbjct 343291 GTATCCGAGGGCTCGACCTCGAGAGTAATGGTCTTCCCCGTCAGGGTCTTCACGAAAATC 343232 Query 172065 TGCATTTT 172072 ||||| || Sbjct 343231 TGCATCTT 343224 >seq350242 Length=2039022 Score = 127 bits (140), Expect = 4e-24 Identities = 172/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || |||| ||| | ||| | ||| || ||| || Sbjct 795382 TTTCTTAGCACCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTT 795441 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || |||| ||| || ||||||||||| | ||| || || Sbjct 795442 GTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTG 795501 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 |||||| || |||||||| ||||| || || || |||||||| ||| ||||| || Sbjct 795502 GTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGA 795561 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | || || || ||||| ||||| || | || | || || | ||| |||||||| || Sbjct 795562 GGGCTCGACCTCGAGAGTGATGGTCTTCCTCGTCAGGGTCTTCACGAAAATCTGCATCTT 795621 >seq349183 Length=1390819 Score = 84.2 bits (92), Expect = 4e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| || || | || | || | ||| | |||||| || || || || Sbjct 1325143 ATCCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCA 1325202 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || |||| ||||| || ||||| || | ||||| ||||| || Sbjct 1325203 GACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGG 1325262 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| |||||||| || || ||||| || || || | || Sbjct 1325263 GGGATGCCTTCTTTTTCTTGTATCTTCCCCTTGACATTCTCGATGGTGTCACTGGGCTCC 1325322 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || ||||| |||||||||||||| | || || | || ||||||||| Sbjct 1325323 ACCTCCAGAGTGATGGTTTTACCAGTGAGGGTCTTCACAAAGATCTGCATT 1325373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 900983880941400