Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq349686 136 1e-26 seq349863 89.7 2e-12 >seq349686 Length=1138722 Score = 136 bits (150), Expect = 1e-26 Identities = 380/570 (67%), Gaps = 16/570 (3%) Strand=Plus/Minus Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGAT 133135 ||||| || || || || | || | || ||||||||||||||||| ||| | | | Sbjct 731030 TTTGTCATCTTTCCTATCGAATACCATGATATTTGGCAGATGTATAAGAAAGCTGAGGCT 730971 Query 133136 TTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACC--CAGCCCACTGGGAAGCCC 133193 | |||||||| | || || || | ||||| ||| |||| |||||||||||| Sbjct 730970 TCCTTTTGGACAGCTGAGGAGGTGGACCTTTCCAAGGACATTCAGC--ACTGGGAAGCCC 730913 Query 133194 TTACTGGGGATGAAAAACATTTTATTT-CTATGATTTTAGCGTTTTTTGCTGCGAGTGAT 133252 | | || || | | ||||||||| | ||| | | || || ||||| || || ||| Sbjct 730912 TGAAGCCTGAGGAGAGATATTTTATTTCCCATG-TGCTGGCTTTCTTTGCAGCAAGAGAT 730854 Query 133253 GGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCC 133312 || || || |||||| || | ||||||| ||||||||| | | || ||| Sbjct 730853 GGCATAGTAAATGAAAACTTGGTGGAGCGGTTTAGCCAAGAAGTTCAGATTACTGAGGCC 730794 Query 133313 CGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCT--ATCACATATTCTA 133370 ||| || ||||| | || ||||| |||||||| || |||||| | ||| ||| Sbjct 730793 CGTTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATAGTCTC 730734 Query 133371 CTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATT- 133429 ||| ||||| |||||||| |||||| || | | | | || ||||| |||||| Sbjct 730733 CTC--ATTGACACTTACATTAAAGATTCCAAAGAAAGGGAATTTCTCTTCAATGCCATTG 730676 Query 133430 AG-CGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAA 133488 || ||| | |||||| | || |||||| | || ||||| | ||||| |||||| Sbjct 730675 AGACGA--TGCCTTGTGTGAAGAAGAAAGCAGATTGGGCCTTGCGCTGGATTGGGGACAA 730618 Query 133489 GCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAG 133548 || | | || ||| | || || ||||||| ||| || ||||| || || Sbjct 730617 AGAAGCTACATATGGAGAACGTGTGGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTC 730558 Query 133549 TGGTGCGTTCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTT 133607 ||| | || ||| || || || ||||| || || || || | | ||||| || | Sbjct 730557 CGGTTC-TTTTGCGTCGATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGT 730499 Query 133608 TTTCTAACGAACTTATTTCAAGGGACGAGG 133637 |||| || ||||||||| || ||||||| Sbjct 730498 TTTCCAATGAACTTATTAGCAGAGACGAGG 730469 >seq349863 Length=2063433 Score = 89.7 bits (98), Expect = 2e-12 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 ||||||| || || || |||||||| || || || || |||| || ||||| ||||| Sbjct 2049008 ACCAGTTTCAGCAGTCTTGACAGCTGTGTCGATCAGCCCCTCACGGCCCCCCATGGCATG 2048949 Query 302667 GAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCG 302725 |||||| | ||| || ||| || || | | ||||| |||| || || || || Sbjct 2048948 GAAGAAGAACTC-AGTGGGCGTGAGGCCGGCCAGGTAGGAGTTCTCCACAAAGCCTCGGC 2048890 Query 302726 CCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATG 302785 ||| ||| || ||| ||| | ||||| |||||||||| || || | || ||| Sbjct 2048889 TCTCAGGCCCATAGTCATCTTTGATGAAGTGAGGCAGGGTCCGGTGCTTGAATCCAAATG 2048830 Query 302786 GGATACGCTTTCCATCAACGTTCTGCTGTCC 302816 |||| ||||| || || || |||||||| || Sbjct 2048829 GGATCCGCTTGCCCTCCACATTCTGCTGCCC 2048799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1464897158259271