Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq350456 176 4e-39 seq349602 113 4e-20 >seq350456 Length=1739126 Score = 176 bits (194), Expect = 4e-39 Identities = 706/1099 (64%), Gaps = 47/1099 (4%) Strand=Plus/Minus Query 20205 ATGCCTTTTGTGTGATAGATCTTGGAGAAATTGTGCAGAGACATTTTAGATGGCTCAAGG 20264 ||||||| ||||| || || ||||| ||| || ||| |||| | |||||| | || | Sbjct 1383812 ATGCCTTCTGTGTTGCGGACCTGGGAGACATTCTGAAGAAACATCTGAGATGGTTGAAAG 1383753 Query 20265 CTTTGCCTAAAGTCATTCCATTTTACGCCGTTAAGGCCCA-GAACGACGAGAGAGTCCTC 20323 || | ||| || | || ||||| || || || | | || | || | | | Sbjct 1383752 CTCTTCCTCTGGTAACCCCCTTTTATGCAGTCAAATGCAATGATAGCAGAACCA-TAGTG 1383694 Query 20324 AAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTA 20383 ||||| || |||||| || || || |||||||||||||| ||| || || || | Sbjct 1383693 AAGACACTCGCTGCCATTGGGACAGGATTTGACTGTGCCAGCAAGACTGAAATACAAATG 1383634 Query 20384 CTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCCT 20443 |||| | ||| || || | | |||| ||||| | | ||| ||||| | ||| || Sbjct 1383633 GTGCAGAGTCTCGGGGTGCCCCCAGAGAGGATTATCTATGCAAATCCATATAAACAAGTG 1383574 Query 20444 TCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAGAA 20503 || || || | |||||| || | | ||||| | ||||||||||||||||||||| Sbjct 1383573 TCTCAGATTAAGTATGCTGCCAATAACGGAGTCCAGATGATGACTTTTGATAGTGAAGTT 1383514 Query 20504 GAGCTTACCAAAATTGATCGCCTGCACCATGATGCTAAGCTGGTACTGAGGATTAAAGTG 20563 ||||| | ||| ||| | || | | || ||| |||| || |||| Sbjct 1383513 GAGCTGATGAAAGTTGCCAGGGCACATCCAAAGGCCAAGTTGGTTTTGCGGATCGCCACT 1383454 Query 20564 GATGACTCTAACTCAGACAGCATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAGCCAGC 20623 ||||| || || ||| | | || |||||||| ||||| || | | || ||||| Sbjct 1383453 GATGATTCCAAAGCAGTCTGTCGCCTCAGTGTCAAATTTGGTGCCACACTCAAAACCAGC 1383394 Query 20624 CAACGCCTGCTAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATCGGAGTCAGCTTCCAC 20683 | || | ||| ||| ||| | ||| | || || || || |||||||||||| Sbjct 1383393 AGGCTTCTTTTGGAACGGGCGAAAGAGCTAGATATTGATGTCATTGGTGTCAGCTTCCAC 1383334 Query 20684 GTGGGCAGTGGCTGCAAAGATGCACAGGCTTACAGAAAAGCCATAGCTGAGGCCAGGAGA 20743 ||||| |||||||| | ||| | || | | | ||||| |||| ||| | | Sbjct 1383333 GTGGGAAGTGGCTGTACTGATCCTGAGACCTTTGTGCAGGCCATCTCTGATGCCCGCTGT 1383274 Query 20744 GCTTTTGACTTTGGCACGCTGA--TGGGCTTTGACATGTACCTCTTGGATATTGGTGGCG 20801 | |||||| | || |||||| | || || |||||| || | ||||||||||| | Sbjct 1383273 GTCTTTGACATGGG--CGCTGAGGTTGGTTTCATCATGTATCTGCTTGATATTGGTGGTG 1383216 Query 20802 GCTTTCCCGGGATCAATGAGATTG---AGCCAACTTTTGAGGACATTGCAGAAGTCATTA 20858 ||||| || ||||| |||| || ||| | ||||| | || | || || | Sbjct 1383215 GCTTT-CCTGGATC--TGAGGATGTAAAGCTTAAATTTGAAGCGATCACCAGTGTAATCA 1383159 Query 20859 ACGCGGCCTTGGAAAGGCATTTTCCAGATGATGCCAACCTGACAATTATTGGTGAACCTG 20918 || | || |||| | | |||||||| || | ||| ||| || | ||| || | Sbjct 1383158 ACCCAGCACTGGACAAGTATTTTCCATCAGACTCTGGAGTGAGAATCATAGCTGAGCCGG 1383099 Query 20919 GCAGGTACTACGCTACCTCGGCGCTAACTATAGCTGTAACTGTGATTGCTAAAAA--GTG 20976 |||| ||||| | | | || || | || | || || | | | ||||| ||||| || Sbjct 1383098 GCAGATACTATGTTGCATCAGCTTTCACGCTCGCAGTTAATATTATTGCCAAAAAACTTG 1383039 Query 20977 TGTTGAAG--ACACTC-----CTGGAGATAAAAAG------------------TTTATGT 21011 | || ||| ||| | ||| ||| || || ||||||| Sbjct 1383038 TATTAAAGGAACAGACAGGCTCTGATGATGAAGAGGAGTCAACTGATCGGACATTTATGT 1382979 Query 21012 ATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTA--ACCATGCTCG 21069 ||||||| || ||||| || ||||| || |||||| ||| |||| | || || | Sbjct 1382978 ATTATGTGAACGATGGAGTGTATGGGTCATTCAACTGC--ATTCTTTACGATCACGCACA 1382921 Query 21070 TCCTATGCCTATGCTGCTTAA-AGAAAAACGCCTTGAAGACAAAGACTATGTTTCTAGCA 21128 | |||| | |||| || ||| | || || || || | ||| || |||| Sbjct 1382920 CATGAAGCCTCTTCTGCAGAAGAGACCCAAACC-AGATGAGAAGTATTATTCATCCAGCA 1382862 Query 21129 TTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCAGAGC 21188 | ||||| || | ||| || || | || |||||||| ||| ||| | ||||| ||| Sbjct 1382861 TCTGGGGACCGACCTGTGACGGTCTGGACCGCATTGTTGAGCACTGTAACCTGCCCGAGA 1382802 Query 21189 TTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTCAGCT-CT 21247 | || ||||| || ||| | | ||||| |||||||| ||||||| || | ||| || Sbjct 1382801 TGCATGTGGGTGATTGGATGCTCTTTGAGAACATGGGTGCTTACA-CTGTTGCTGCTGCT 1382743 Query 21248 TCAACCTTTAACGGCTTCC 21266 || ||||| || || |||| Sbjct 1382742 TCTACCTTCAATGGATTCC 1382724 >seq349602 Length=1086715 Score = 113 bits (124), Expect = 4e-20 Identities = 623/991 (63%), Gaps = 57/991 (6%) Strand=Plus/Minus Query 20324 AAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTA 20383 ||||| || |||||| || || || |||||||||||||| ||| || || || | Sbjct 16532 AAGACACTTGCTGCCATTTGGACAGGATTTGACTGTGCCAGCAAGACTGAAATACAACTG 16473 Query 20384 CTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCCT 20443 | || | ||| || || | | |||| ||||| | | ||| ||||| ||||| || Sbjct 16472 GTACAGAGTCTCGGGGTGCCCCCAGAGAGGATTATCTATGCAAATCCATGTAAACAAGTG 16413 Query 20444 TCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAGAA 20503 || || || | |||||| || | | |||| | ||||||||||||||||||||| Sbjct 16412 TCTCAGATTAAGTATGCTGCCAATAACAGAGTCCAGATGATGACTTTTGATAGTGAAGTT 16353 Query 20504 GAGCTTACCAAAATTGATCGCCTGCACCATGATGCTAAGCTGGTACTGAGGATTAAAGTG 20563 ||||| | ||| ||| | || | | || ||| |||| || |||||| Sbjct 16352 GAGCTGATGAAAGTTGCCAGGGCACATCCAAAGGCCAAGTTGGTTTTGCGGATTACCACT 16293 Query 20564 GATGACTCTAACTCAGACAGCATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAGCCAGC 20623 ||||| || || ||| | | || ||||| || ||||| || | | || | Sbjct 16292 GATGATTCCAAAGCAGTCTGTCGCCTCAGTGTTAAATTTGGTGCCACGCTCAAAAAAAAA 16233 Query 20624 CAA-----------CGCCTGCTAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATCGGAG 20672 || ||| | ||| ||| ||| | |||| | || || || || | Sbjct 16232 AAAAAAGCTCTTTTGCCCTTTTGGAACGGGCGAAAGAGCTAGGTATTGATGTCATTGGTG 16173 Query 20673 TCAGCTTCCACGTGGGCAGTGGCTGCAAAGATGCACAGGCTTACAGAAAAGCCATAGCTG 20732 |||||||||||||||| |||||||| | ||| | || | | | ||||| ||| Sbjct 16172 TCAGCTTCCACGTGGGAAGTGGCTGTACTGATCCTGAGACCTTTGTGCAGGCCATCTCTG 16113 Query 20733 AGGCCAGGAGAGCTTTTGACTTTGGCACGCTGATGGGCTTTGACATGTACCTCTTGGATA 20792 | ||| | | | |||||| | ||||| | | || || ||||||| || | || | Sbjct 16112 ATGCCCGCTGTGTCTTTGACATGGGCACTGAGGTTGGTTTCAACATGTATCTGCTTGAAA 16053 Query 20793 TTGGTGGCGGCTTTCCCGGGATCAATGAGATTG---AGCCAACTTTTGAGGACATTGCAG 20849 ||||||| |||||| || ||||| |||| || ||| | ||||| || || | Sbjct 16052 TTGGTGGTGGCTTT-CCTGGATC--TGAGGATGTAAAGCTTAAATTTGAAGAGATCACCA 15996 Query 20850 AAGTCATTAACGCGGCCTTGGAAAGGCATTTTCCAGATGATGCCAACCTGACAATTATTG 20909 || || ||| ||| |||| | | |||||||| || | ||| ||| || | Sbjct 15995 GTGTAATCAACCTGGCACTGGACAAGTATTTTCCATCAGACTCTGGAGTGAGAATCATAG 15936 Query 20910 GTGAACCTGGCAGGTACTACGCTACCTCGGCGCTAACTATAGCTGTAACTGTGATTGCTA 20969 ||| || ||||| ||||| | | | || || | | | || || | | | ||||| | Sbjct 15935 CTGAGCCGGGCAGATACTATGTTGCATCAGCTTTCATGCTTGCAGTTAATATCATTGCCA 15876 Query 20970 AAAA--GTGTGTTGAAG--ACACTC-----CTGGAGATAAAAAG---------------- 21004 |||| ||| || ||| ||| | ||| ||| || || Sbjct 15875 AAAAACTTGTATTAAAGGAACAGACAAGCTCTGATGATGAAGAGGAGTCAAGTGAATGGA 15816 Query 21005 --TTTATGTATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTA--A 21060 ||||||||||| | || ||||| || ||||| || ||||| ||| |||| | Sbjct 15815 CATTTATGTATTACCTGAACGATGGAGTATATGGGTCATTCAACTG-GTATCCTTTACGA 15757 Query 21061 CCATGCTCGTCCTATGCCTATGCTGCTTAA-AGA---AAAACGCCTTGAAGACAAAGACT 21116 || || | | |||| | |||| || ||| ||| | || || || | | Sbjct 15756 TCACGCACACGTGAAGCCTCTTCTGCAGAAGAGACCCAAATC----AGATGAGAAGTATT 15701 Query 21117 ATGTTTCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTG 21176 || || ||||| || || | ||| || || | || |||||||| |||| ||| Sbjct 15700 ATTCATCCAGCATCAGGACACCGACCTGTGACAGCCTGGACCGCATTGTTGAGCGCTGTA 15641 Query 21177 AACTGCCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCT 21236 | ||||| ||| | || ||||| || ||| | | ||||| |||||||| ||||||| || Sbjct 15640 ACCTGCCCGAGATGCATGTGGGTGATTGGATGCTCTTTGAGAACATGGGTGCTTACA-CT 15582 Query 21237 TGGTCAGCT-CTTCAACCTTTAACGGCTTCC 21266 | ||| |||| ||||| || || |||| Sbjct 15581 GTTGCTGCTGCTTCTACCTTCAATGGATTCC 15551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461419183063440