Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq350178 277 2e-69 seq350482 206 3e-48 >seq350178 Length=1026393 Score = 277 bits (306), Expect = 2e-69 Identities = 664/1001 (66%), Gaps = 9/1001 (1%) Strand=Plus/Plus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| | |||| |||||| | |||||||| || || | ||| ||| Sbjct 569518 CCAGGGCTTTATGCCTCAGATGCTCGTCCAAACACTGGATGGCAAAGAGGTCAATGTCCG 569577 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 ||||| ||||| || |||| ||| ||| || | || | ||| || | || || | Sbjct 569578 TGTCGAATTTGTTGGCAAACAAGTGGTGCACGTGC---AACAGCCAGTTCAAGTCACCAG 569634 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 |||||| |||||||| || |||||||| ||||||||||||||||| || |||| || | Sbjct 569635 CTCCGAAAACGCACACAGAGCGCACGTGGACGCCGCTGCACGGCGGGTAGGGGGCGCCCT 569694 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | || || || || |||| ||||| ||||| ||||| | || || |||||||| | Sbjct 569695 TGGAAACGTCTCCTTCAAAGTACTGCCATTTAACAAACCTGGCAATCGCTTGCATGTCAG 569754 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | |||| ||||| | | | | || | || || || | || | ||||| | || Sbjct 569755 ACATGTCATACTTATGGCTTAAGGACAATGACCCTGGGACTTCGGGGATCCTCTGAATAG 569814 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| || | |||||||| || || || || || | ||||||||| |||| || Sbjct 569815 TGGCCCAGAGATACTCGTCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGGA 569874 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 ||| | | || | ||| || || | | | || | ||| || || || | Sbjct 569875 TATTTTGGTTCTGGAGCACGTACTCCACATACTCCTTACTGACCACAAAATAGGCACTGC 569934 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538 | ||||||| ||| | | ||| || | |||||| ||| |||| | | Sbjct 569935 CTGAAAACAGAGGTGTTTCAAGAGGTGGATGTATTTTGTCAGTCCCCATGTTTGTCAGCT 569994 Query 162539 TTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTT 162598 |||| || ||||| | | ||| ||||||| | ||||| || | | | | Sbjct 569995 TTCCATCCACGACTTCATAATGCTTTTTCCACCTTTCTTTCTTATGGGATGGCATTTTCT 570054 Query 162599 CGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGG 162658 | || ||||| |||| ||| ||| |||||||| | || || || || |||| Sbjct 570055 CTGTTTCTAGGTTGTTCTCGCCCATCAACAGCTTCAGCTTCCTGACAATTTCCAGGTTGG 570114 Query 162659 TCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTC 162718 | |||| ||||| || | ||||||||||| || | || ||||| | | | Sbjct 570115 TTTTAATAGGAAAATCCATACCGCAGAGATTTATCAGGTACTTCCAGCCTGCATTCATCT 570174 Query 162719 CGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGA 162778 ||| || ||||| | ||||| || || ||||| || || ||||| ||||| ||||| | Sbjct 570175 GGTAGAGGTCCTGCATGCAGTTAAGGTCAGCCTGAACCCGGCTCCAGGACGCATACACCA 570234 Query 162779 CGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCC--CATC-A 162835 ||||||||| | | |||||||||||||||| ||| || || | || || || | Sbjct 570235 CGCTCTCCAGCTGACTGGCGACAAAGACATTACTGAAGCAGGATGCGATGCCAACAGCTG 570294 Query 162836 CGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAG 162895 | |||| || | || || | ||| | ||| ||||| | || || | |||||||| Sbjct 570295 CAGCCAAAAAGGATTTC---TCTGATTTTCCATCCACGTGAATACAATAGAAATTCTGAG 570351 Query 162896 GGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAG 162955 | || ||||||||||| | || || | ||| || || || || || ||||| |||| Sbjct 570352 GCATATATATGGCCCTCAGGAGCCTGTCAAGCATTTCGATTTTGTGATGAACCACTATAG 570411 Query 162956 AATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTGCGGT 163015 |||| ||||| || || || ||||| || ||| || | |||||| || ||||| | Sbjct 570412 AATATGCTATTGGAAATTCCGCCTCTTCTTTACTAAGTGGTTCTGTAATATATTTGCGCT 570471 Query 163016 CCCTCACAAACGCCGCACAGTCCTCCGTCATGTTAACGTAG 163056 | | | || | ||||| || | |||||||| | |||| Sbjct 570472 TCTTAATGAAAGAAGCACAATCACCAGTCATGTTTATGTAG 570512 >seq350482 Length=687177 Score = 206 bits (228), Expect = 3e-48 Identities = 239/322 (74%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| || || |||| | || || || ||||| || ||||| |||||||| | | Sbjct 42423 CAAAGAGAGTGAGGCAGGCTATTCCTGAGATCTTTCCAGAACCAAAGGTATTAAAGAGGC 42364 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 || | |||| | || || |||| |||||| ||||| || || | || || || ||| Sbjct 42363 ACTTGTAACACGCCTCATCTTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCATGA 42304 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || || || ||||| | | ||||||||| | ||||||||| ||||| || || | Sbjct 42303 GTCCCAGCTGGGTGATGTTTATCTTGTCCTTGTAGGCAGGCTGGACTACAACCCCATGGT 42244 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 |||||||| | ||| ||||||||| ||||| |||||| || || ||||| || || | Sbjct 42243 TCTCGCTGTAGGTGATCATGTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAA 42184 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | |||||||| | | |||| ||||||||||||||||||||||||||||||| | Sbjct 42183 TCAAAACTTCCTGGGGATTTTGCAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAGCAGCC 42124 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | ||| | || || || ||||| Sbjct 42123 CTCTTACATCCTGGGTCACCAC 42102 Score = 98.7 bits (108), Expect = 1e-15 Identities = 171/248 (69%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 || |||| ||| ||| || |||||||||| ||||| || | ||| ||||| |||| Sbjct 45083 ACGGTTTCCCTGTAGTCGGTCACAGTCCCCAGGTGTAGCACCTGGCAGATCACATCCT-- 45026 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | ||||| || | || || ||||| | || || ||||| || |||||||| || || Sbjct 45025 -TCCCCACCTGTGTCTTGGGGTCTTTGATCTGGAGGATGCTGGTGACAGATGTTGTTCCA 44967 Query 171623 TTACGATGTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAAT 171682 || | ||| ||| | | ||||| || || || || || || || ||||| | Sbjct 44966 TTGGGGTGTGAGACGATCTCGGTACTGTTCTCAATCCCTGACCCAAAGACCTTCCAGGAG 44907 Query 171683 ATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAAC 171742 || | ||| ||||| | |||| | ||||||||||| | |||| |||||| | || Sbjct 44906 ATCATAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGACATTTAGGTGATCTTCAGATAAT 44847 Query 171743 TCATAGTG 171750 | |||||| Sbjct 44846 TTATAGTG 44839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 575778566116800