Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_025963.1 Length=139981 Score E Sequences producing significant alignments: (Bits) Value seq348424 84.2 2e-11 >seq348424 Length=378570 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 133104 TGGGGTGCCAAGCACTCTCGGAGATGATCCAGTTCTACCTGGAAGAAGTCATGCCGCAGG 133163 |||| |||||||| | ||||| ||||||||||| ||||||||||| || ||||| |||| Sbjct 357733 TGGGTTGCCAAGCCTTGTCGGAAATGATCCAGTTTTACCTGGAAGAGGTGATGCCACAGG 357792 Query 133164 CAGAGAATCACGGACC 133179 | ||||| ||||| || Sbjct 357793 CTGAGAACCACGGGCC 357808 Score = 82.4 bits (90), Expect = 7e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 133311 AGCTCCAGGAACGCGGTGTGTACAAGGCCATGAGCGAGTTCGACATCTTCATCAACTACA 133370 ||||||| || | ||||| ||||| |||||||| ||||| ||||||||||||||||||| Sbjct 360037 AGCTCCAAGACAGGGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 360096 Query 133371 TAGAGACATA 133380 |||| || || Sbjct 360097 TAGAAACCTA 360106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445756961279880