Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq349767 107 6e-20 seq350205 104 7e-19 seq350140 104 7e-19 seq349931 104 7e-19 seq350799 98.7 3e-17 seq349210 98.7 3e-17 seq349183 98.7 3e-17 seq346890 98.7 3e-17 seq350721 96.9 1e-16 seq349456 96.9 1e-16 seq350596 93.3 1e-15 seq349324 91.5 5e-15 seq349662 89.7 2e-14 seq349284 89.7 2e-14 seq350791 87.8 6e-14 seq349908 87.8 6e-14 seq349587 84.2 7e-13 seq350334 82.4 2e-12 seq349684 82.4 2e-12 seq348873 82.4 2e-12 seq350718 80.6 8e-12 seq349368 80.6 8e-12 >seq349767 Length=250266 Score = 107 bits (118), Expect = 6e-20 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 189870 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 189929 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 189930 TCCCGGGTTTCGGC 189943 >seq350205 Length=946844 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 451744 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 451803 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 451804 CCGGGTTTCGGC 451815 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 457418 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 457477 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 457478 CCGGGTTTCGGC 457489 >seq350140 Length=662418 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 219588 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 219647 Query 2829 CCGGGCTTCAGC 2840 ||||| |||||| Sbjct 219648 CCGGGTTTCAGC 219659 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 246712 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 246771 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 246772 CCGGGTTTCGGC 246783 Score = 102 bits (112), Expect = 3e-18 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 236676 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 236617 Query 2827 CCCCGGGCTTCAGC 2840 ||| || ||| || Sbjct 236616 TCCCAGGTTTCGGC 236603 Score = 100 bits (110), Expect = 9e-18 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 195175 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 195234 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 195235 CCCGGGTTTCGGC 195247 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 105141 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 105200 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 105201 CCGGGTTTCGGC 105212 Score = 89.7 bits (98), Expect = 2e-14 Identities = 62/69 (90%), Gaps = 1/69 (1%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATC-TAAAGGTCCCTGGTTCAAC 2827 |||||| |||||||| |||||||| |||||||||||||| ||||||||||||||||||| Sbjct 225278 GCTGAAATAGCTCAGCTGGGAGAGAGTTAGACTGAAGATCTTAAAGGTCCCTGGTTCAAC 225219 Query 2828 CCCGGGCTT 2836 ||| || || Sbjct 225218 CCCAGGTTT 225210 >seq349931 Length=5449466 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 3123138 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 3123197 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 3123198 CCGGGTTTCGGC 3123209 >seq350799 Length=5436376 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 3551830 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 3551889 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 3551890 CCGGGTTTCGGC 3551901 >seq349210 Length=2416855 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 365080 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 365021 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 365020 CCGGGTTTCGGC 365009 >seq349183 Length=1390819 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1338061 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1338002 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1338001 CCGGGTTTCGGC 1337990 >seq346890 Length=236272 Score = 98.7 bits (108), Expect = 3e-17 Identities = 63/69 (91%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||| | Sbjct 15533 GCTGAAATAGCTCAGTTGGGAGAATATTAGACTGAAAATCTAAAGGTCCCTGGTTCAATC 15474 Query 2829 CCGGGCTTC 2837 ||||| ||| Sbjct 15473 CCGGGTTTC 15465 >seq350721 Length=1122249 Score = 96.9 bits (106), Expect = 1e-16 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct 1075277 GGCTGAAATAGCTCTGTTGGGAGAGTGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAGT 1075336 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 1075337 CCCGGGTTTCGGC 1075349 >seq349456 Length=1442673 Score = 96.9 bits (106), Expect = 1e-16 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 ||||||||| ||||||| ||||||||||||||| ||||||||||||| |||||||||||| Sbjct 923754 ATGGCTGAAATAGCTCAATTGGGAGAGCATTAGTCTGAAGATCTAAAAGTCCCTGGTTCA 923695 Query 2826 ACCCCGGGCTT 2836 | ||| || || Sbjct 923694 ATCCCAGGTTT 923684 >seq350596 Length=2651931 Score = 93.3 bits (102), Expect = 1e-15 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 2772 GAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCG 2831 ||| |||||||||||||||||| ||||||||||||| || ||||||||||||||| || | Sbjct 1043506 GAAATAGCTCAGTTGGGAGAGCCTTAGACTGAAGATGTAGAGGTCCCTGGTTCAATCCTG 1043447 Query 2832 GGCTTCAGC 2840 || |||||| Sbjct 1043446 GGTTTCAGC 1043438 >seq349324 Length=400784 Score = 91.5 bits (100), Expect = 5e-15 Identities = 60/65 (92%), Gaps = 1/65 (2%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| ||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 2640 GCTGAA-TAGCTCAGTTGGGAGAGAGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 2582 Query 2829 CCGGG 2833 ||||| Sbjct 2581 CCGGG 2577 Score = 91.5 bits (100), Expect = 5e-15 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||| Sbjct 13687 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGTTCTAAAGGTCCCTGGTTCAATCCCGGG 13630 Score = 91.5 bits (100), Expect = 5e-15 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||| | |||||||||||||||||||||| ||||||||||||||||||||||||| | | Sbjct 15070 GCTGGAAAAGCTCAGTTGGGAGAGCATTAGCCTGAAGATCTAAAGGTCCCTGGTTCCATC 15011 Query 2829 CCGGG 2833 ||||| Sbjct 15010 CCGGG 15006 Score = 82.4 bits (90), Expect = 2e-12 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 ||||||||||| |||||| ||||||||||| |||||||||||||||||| | |||||| Sbjct 8201 TAGCTCAGTTGCGAGAGCGTTAGACTGAAGTTCTAAAGGTCCCTGGTTCGATCCCGGG 8144 Score = 80.6 bits (88), Expect = 8e-12 Identities = 58/66 (88%), Gaps = 1/66 (2%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATT-AGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGC 2834 |||||||||||| ||||| || ||||||||||||||| |||||||||||| ||||| || Sbjct 584 TAGCTCAGTTGGCAGAGCGTTTAGACTGAAGATCTAACGGTCCCTGGTTCGACCCCAGGT 525 Query 2835 TTCAGC 2840 | |||| Sbjct 524 TCCAGC 519 >seq349662 Length=2209787 Score = 89.7 bits (98), Expect = 2e-14 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| ||| ||||||||||||| ||||||| |||||||||||||||||||||||| | Sbjct 397527 GCCGAAATAGTTCAGTTGGGAGAGTGTTAGACTAAAGATCTAAAGGTCCCTGGTTCAATC 397586 Query 2829 CCGGGCTTCAGC 2840 | ||| |||||| Sbjct 397587 CTGGGTTTCAGC 397598 >seq349284 Length=483197 Score = 89.7 bits (98), Expect = 2e-14 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||||||| ||||||||||| ||||| ||||||||||||||||||||||||| |||||| Sbjct 458073 GGCTGAAATAGCTCAGTTGAGAGAGTGTTAGACTGAAGATCTAAAGGTCCCTTGTTCAAT 458014 Query 2828 CCCGGGCTT 2836 ||| || || Sbjct 458013 CCCAGGTTT 458005 >seq350791 Length=4408762 Score = 87.8 bits (96), Expect = 6e-14 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCT 2835 |||||||| |||||||| |||||||| |||||||||||||||||||||||||||||| | Sbjct 1565232 TAGCTCAGCTGGGAGAGTGTTAGACTGCAGATCTAAAGGTCCCTGGTTCAACCCCGGGTT 1565173 Query 2836 T 2836 | Sbjct 1565172 T 1565172 >seq349908 Length=1422598 Score = 87.8 bits (96), Expect = 6e-14 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 628739 GCTGAAATAGCTCAGTTGGGAGATAATTAGGCTGAAGATCTAAAGGTCCCTGGTTCAA 628682 >seq349587 Length=1294031 Score = 84.2 bits (92), Expect = 7e-13 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||||| || |||||||||||||| ||||| ||||||||| |||||||||||||||| Sbjct 1013210 TGGCTGAAATAACTCAGTTGGGAGAGTGTTAGATTGAAGATCTCAAGGTCCCTGGTTCAA 1013269 Query 2827 CCCC 2830 ||| Sbjct 1013270 TCCC 1013273 >seq350334 Length=835071 Score = 82.4 bits (90), Expect = 2e-12 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 || |||||||||| |||||| ||| ||||||||||||||||||| |||||||| || || Sbjct 109586 AAATAGCTCAGTTAGGAGAGTGTTAAACTGAAGATCTAAAGGTCCTTGGTTCAATCCTGG 109645 Query 2833 GCTTCAGC 2840 | |||||| Sbjct 109646 GTTTCAGC 109653 >seq349684 Length=1014832 Score = 82.4 bits (90), Expect = 2e-12 Identities = 61/70 (87%), Gaps = 1/70 (1%) Strand=Plus/Minus Query 2771 TGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCC 2830 |||| ||| |||||||||| ||| ||||| |||||||||||||||||||||||||| || Sbjct 105702 TGAAATAG-TCAGTTGGGAAAGCGTTAGAGTGAAGATCTAAAGGTCCCTGGTTCAATCCT 105644 Query 2831 GGGCTTCAGC 2840 ||| ||| || Sbjct 105643 GGGTTTCGGC 105634 >seq348873 Length=215762 Score = 82.4 bits (90), Expect = 2e-12 Identities = 53/57 (93%), Gaps = 1/57 (2%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 |||||| ||||||| ||||||||||||||| ||||||||||||||||| |||||||| Sbjct 117376 GCTGAAATAGCTCACTTGGGAGAGCATTAG-CTGAAGATCTAAAGGTCTCTGGTTCA 117431 >seq350718 Length=4013371 Score = 80.6 bits (88), Expect = 8e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 || |||||||||||||||| | |||||||||||| || |||||||||||||||| || || Sbjct 1930078 AAATAGCTCAGTTGGGAGACCGTTAGACTGAAGACCTTAAGGTCCCTGGTTCAATCCTGG 1930137 Query 2833 GCTT 2836 | || Sbjct 1930138 GTTT 1930141 >seq349368 Length=2460363 Score = 80.6 bits (88), Expect = 8e-12 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||||||| ||||| ||||||||||| ||||| ||||||||||||||||||| |||| | Sbjct 511960 GGCTGAAATAGCTAAGTTGGGAGAGTGTTAGAGTGAAGATCTAAAGGTCCCTAGTTCGAT 512019 Query 2828 CCCGGGCTT 2836 || ||| || Sbjct 512020 CCTGGGTTT 512028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15785981662035