Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq365069 86.0 6e-12 seq350242 82.4 7e-11 seq348243 82.4 7e-11 >seq365069 Length=475 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | || || || || | || || || | ||||| |||| ||||| | Sbjct 19 CAAGATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAGCC 78 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | ||||| || || | ||||| || || |||||||| || || || || || Sbjct 79 CTCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTGA 138 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 ||||||||||| || | | ||||| ||||| ||||||| | | | | || || Sbjct 139 CCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 198 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 ||| |||||||| || ||||| ||||| ||||||| ||| Sbjct 199 CAACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGA 238 >seq350242 Length=2039022 Score = 82.4 bits (90), Expect = 7e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 25211 ATCACGATCGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGAT 25270 ||||| |||| ||||| || ||||| || || | ||||| || || ||| Sbjct 795582 ATCACTCTCGAGGTCGAGCCCTCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGAT 795523 Query 25271 AAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGAT 25330 || || || || || || || ||||||||||| |||| | ||||| ||||| |||||| Sbjct 795522 AAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATTTTTGCTGGCAAGCAACTGGAAGAT 795463 Query 25331 GATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 | | | | | || ||||| |||||||| || ||||| ||||| ||||||| ||| Sbjct 795462 GGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGA 795403 >seq348243 Length=269726 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/220 (68%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | || || || || | || || || | ||||| |||| ||||| | Sbjct 207052 CAAGATGCAGATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAGCC 207111 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | ||||| || || | ||||| || || ||||| || || || || || || Sbjct 207112 CTCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 207171 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 ||||||||||| || | | ||||| ||||| ||||||| | | | | || || Sbjct 207172 CCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 207231 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 ||| |||||||| || ||||| ||||| ||||||| ||| Sbjct 207232 CAACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGA 207271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 443052624022560