Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq350482 282 5e-71 seq350759 170 2e-37 seq348424 145 9e-30 seq350358 125 8e-24 >seq350482 Length=687177 Score = 282 bits (312), Expect = 5e-71 Identities = 254/319 (80%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 |||||||||||||||| || | |||||||||||| || || || | | |||||| ||| Sbjct 42102 GTGGTGACCCAGGATGTAAGAGGGCTGCTGAACACACCTGCTTCTTTAAGATGCTCTCTG 42161 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || | | | ||||| || ||||||| || ||||| ||||||||| | | ||||| Sbjct 42162 CAAAATCCCCAGGAAGTTTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCAGAA 42221 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||||| || | ||| | |||| ||||| || |||||||| || || ||||||||| Sbjct 42222 AACATGATCACCTACAGCGAGAACCATGGGGTTGTAGTCCAGCCTGCCTACAAGGACAAG 42281 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 ||||||||||||||||| |||||| ||||||||||| || || |||||||||||||| Sbjct 42282 ATAAACATCACCCAGCTGGGACTCATGAACTCAACCATTACCTTCTGGAATACCACCTTG 42341 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 || || |||| ||| ||||| ||||||||||| |||||||| ||||| || ||||| || Sbjct 42342 GAAGATGAGGCGTGTTACAAGTGCCTCTTTAATACCTTTGGTTCTGGAAAGATCTCAGGA 42401 Query 171372 GTGGCCTGCCTCACCCTCT 171390 | ||||||||||| |||| Sbjct 42402 ATAGCCTGCCTCACTCTCT 42420 Score = 185 bits (204), Expect = 1e-41 Identities = 207/277 (75%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || |||||||| || || || || |||||||| | ||| || ||||| || |||| || Sbjct 44818 GTACAGCCCACAGTATTCCTTCACTATAAATTATCTGAAGATCACCTAAATGTCACTTGC 44877 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||||||||| ||||| | ||| ||| | |||||| | | ||||||| ||||| Sbjct 44878 TCTGCCAATGCTCGCCCAGCCCCTATGATCTCCTGGAAGGTCTTTGGGTCAGGGATTGAG 44937 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 ||||||| |||| | | || || | |||||||| || ||||| ||||| | ||||| Sbjct 44938 AACAGTACCGAGATCGTCTCACACCCCAATGGAACAACATCTGTCACCAGCATCCTCCAG 44997 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 | ||||||||||||| ||| |||| ||||| || |||||||| ||| |||||||| Sbjct 44998 ATCAAAGACCCCAAGACACAGGTGGGGAAGGATGTGATCTGCCAGGTGCTACACCTGGGG 45057 Query 171633 AATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 | ||| || ||| |||||||| || | ||| |||| Sbjct 45058 ACTGTGACCGACTACAGGGAAACCGTGAACAAAGGTA 45094 >seq350759 Length=3492976 Score = 170 bits (188), Expect = 2e-37 Identities = 148/184 (80%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||| | || | ||| || | ||||||||||||||| | ||||||||| |||||||| Sbjct 2680971 CTTCAGGTCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAA 2680912 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || |||||||||||||| ||||||| |||||||| |||||| || |||||||| | Sbjct 2680911 GGGCACACCCAGGCCCATGTCTCCCGACCGCTGGTACAACTGGCAGGACAGCTCCCCATT 2680852 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGC 147161 ||||||| |||||||| ||| |||||| || || || |||||| ||||| || | Sbjct 2680851 CACCACGTAGAACTGGCAGAGGGCGTGGCATGGGGGGAGGGCCATGAGAGGCAGATCTGA 2680792 Query 147162 GGGG 147165 |||| Sbjct 2680791 GGGG 2680788 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 |||||||| ||||||||||||||||| || ||||| || | || || ||||| Sbjct 2678591 GCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCTAAATCCCCTTCAGCTCTGTCG 2678532 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 ||||||||| | | | || || ||||||||| ||| ||||| || ||||||| Sbjct 2678531 GAGAAGCCCAGGCCATCCAAGAAGTCTCGGGACCCGTTGGCATCCCAAATTTTCACTCCC 2678472 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCC 147435 |||| ||||| ||||||| || ||||| ||| Sbjct 2678471 TTGGAAGAGAGTTCCTTAGCGTTGGTGGATCCC 2678439 >seq348424 Length=378570 Score = 145 bits (160), Expect = 9e-30 Identities = 131/167 (78%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| || ||||| ||||||||| |||| ||||||| Sbjct 357724 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAAATGATCCAGTTTTACCTGGAAGAGGTGA 357783 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| ||| || || ||||| |||||||| || |||| Sbjct 357784 TGCCACAGGCTGAGAACCAC------------GGGCCTGACATCAAGGAGCACGTGAACT 357831 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||| ||||| |||||||| | || |||||||||| ||| Sbjct 357832 CGCTGGGGGAGAAGCTGAAGACCCTCCGGCTGCGGCTGCGGCGCTGT 357878 Score = 93.3 bits (102), Expect = 5e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| | |||||| |||||||| |||||||||||||| || || || ||||||| Sbjct 360037 AGCTCCAAGACAGGGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 360096 Query 178522 TAGAAGCTTACATGACAACAAAAATG 178547 ||||| | ||| ||||||| || ||| Sbjct 360097 TAGAAACCTACGTGACAACGAAGATG 360122 >seq350358 Length=663768 Score = 125 bits (138), Expect = 8e-24 Identities = 211/304 (69%), Gaps = 6/304 (2%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| || || || | ||||| | ||||| | | | |||| Sbjct 231037 GTACTCCCTGGTGTTCATGACCGGCCTGCTGGGCAACGTGATGGTGGTGGTGATACTCAC 231096 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 || |||||| ||||| |||||||||||||||||| |||| ||||| ||||| || ||| Sbjct 231097 CAAATACAAGCGGCTCCGGATCATGACCAACATCTACCTGCTCAACTTGGCCATTTCTGA 231156 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 | |||| | | ||||| || || || |||||||||| | || ||||| | Sbjct 231157 CGTGCTCTTCCTATTCACGCTGCCATTCTGGATTCACT--ATGTTAGGTGGAAC----GA 231210 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 ||||| | ||||| |||||||||||| | || || | || ||| |||| Sbjct 231211 GTGGGTTTTTGGCCACCGCATGTGTAAGTTGCTCTCCGGGCTCTATTACATGGGCTTGTA 231270 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGC 8909 ||| || || | || |||||||| ||||| | ||| |||||||||| | || |||| Sbjct 231271 CAGTGAGATCTTCTTCATCATCCTCTTGACCATAGACCGGTATCTTGCCATCGTCCACGC 231330 Query 8910 GGTG 8913 ||| Sbjct 231331 CGTG 231334 Score = 118 bits (130), Expect = 1e-21 Identities = 118/153 (77%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| | |||| || || ||||| | ||| ||| |||| |||||||| Sbjct 139097 GTACTCCATGGTGTTTGTCATTGGCCTGATCGGCAACGTCCTAGTGGTCCTGGTCCTCAT 139038 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | |||||||||||||| | |||||||| ||||| ||| ||||||||||| || ||| Sbjct 139037 GCAATACAAGAGGCTCAGAAGCATGACCAGCATCTACCTCCTCAACCTGGCCATTTCTGA 138978 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGAT 8762 ||| | | | ||||| || ||||| ||||| Sbjct 138977 CCTCATCTTCCTCTTCACGCTGCCCTTCTGGAT 138945 Score = 114 bits (126), Expect = 2e-20 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| | |||| || || ||||| ||| ||| |||| |||||||| Sbjct 166841 GTACTCCATGGTGTTTGTCATTGGCCTGATCGGCAACATCCTAGTGGTCCTGGTCCTCAT 166782 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | ||||||||||||| | |||||||| ||||| ||| ||||||||||| || ||| Sbjct 166781 GCAATACAAGAGGCTCAAAAGCATGACCAGCATCTACCTCCTCAACCTGGCCATTTCTGA 166722 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGAT 8762 ||| || | | ||||| || ||||| ||||| Sbjct 166721 CCTCCTCTTCCTCTTCACACTGCCCTTCTGGAT 166689 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 ||||| ||||| | ||||| | ||| ||||||||| ||| |||||||| |||||||||| Sbjct 231750 TGGACCTGGCCATGCTGGTGACAGAGGTGATCGCCTACACGCACTGCTGTGTCAACCCCG 231809 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 | ||||| || || || || || | ||||| Sbjct 231810 TGATCTATGCCTTCGTTGGTGAGAGGTTCC 231839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 580811372791200