Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq349630 113 6e-20 seq34441 113 6e-20 >seq349630 Length=973687 Score = 113 bits (124), Expect = 6e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 213996 AGATTATTGACGGGGAAGTCTACCCTCCTACCGTCAAGGAGGCCCGAGTGCATATGGTTT 214055 |||| ||| | || || | || ||||| || ||||| || | | || | ||| | | Sbjct 421761 AGATGATTAATGGAGAGATGTATCCTCCCACAGTCAAAGATACTCAGGTCGAAATGATCT 421820 Query 214056 ACGAACCCAGCGTTCCCGAAAAGTT-ACGTTTCGCACTGGGTAACGAGATGTTTGGACTC 214114 || || ||||| ||| | || | |||| || |||| | ||| | ||||| || Sbjct 421821 ACCCGCCTCATGTTCCTGAACACTTGAAGTTT-GCTGTGGGCCAGGAGGTCTTTGGTCTG 421879 Query 214115 GTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACAGGGTTTGCGAC 214174 ||||| ||| | ||| ||||||||| || |||||| | || |||||||| || || || Sbjct 421880 GTGCCTGGTCTGATGATGTACGCCACCATTTGGCTGCGGGAACACAACAGAGTGTGTGAT 421939 Query 214175 GTGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTCCAGA 214223 ||||| ||||||||||| || |||||| ||| || ||| ||||||||| Sbjct 421940 GTGCTTAAACAAGAGCATCCAGAATGGGGCGATGAGCAGTTGTTCCAGA 421988 >seq34441 Length=663 Score = 113 bits (124), Expect = 6e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 213996 AGATTATTGACGGGGAAGTCTACCCTCCTACCGTCAAGGAGGCCCGAGTGCATATGGTTT 214055 |||| ||| | || || | || ||||| || ||||| || | | || | ||| | | Sbjct 278 AGATGATTAATGGAGAGATGTATCCTCCCACAGTCAAAGATACTCAGGTCGAAATGATCT 219 Query 214056 ACGAACCCAGCGTTCCCGAAAAGTT-ACGTTTCGCACTGGGTAACGAGATGTTTGGACTC 214114 || || ||||| ||| | || | |||| || |||| | ||| | ||||| || Sbjct 218 ACCCGCCTCATGTTCCTGAACACTTGAAGTTT-GCTGTGGGCCAGGAGGTCTTTGGTCTG 160 Query 214115 GTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACAGGGTTTGCGAC 214174 ||||| ||| | ||| ||||||||| || |||||| | || |||||||| || || || Sbjct 159 GTGCCTGGTCTGATGATGTACGCCACCATTTGGCTGCGGGAACACAACAGAGTGTGTGAT 100 Query 214175 GTGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTCCAGA 214223 ||||| ||||||||||| || |||||| ||| || ||| ||||||||| Sbjct 99 GTGCTTAAACAAGAGCATCCAGAATGGGGCGATGAGCAGTTGTTCCAGA 51 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 720022627789920