Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq349686 329 3e-85 seq350466 107 2e-18 seq348784 86.0 5e-12 >seq349686 Length=1138722 Score = 329 bits (364), Expect = 3e-85 Identities = 619/899 (69%), Gaps = 22/899 (2%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | ||||| || |||| ||||| || ||||| ||||| || ||||| |||| Sbjct 731030 TTTGTCATCTTTCCTATCGAATACCATGATATTTGGCAGATGTATAAGAAAGCTGAGGCT 730971 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTT--AGCACATTGGATTGCAT 43817 || ||||||||||| || || || || | | || ||| | ||||| ||| || Sbjct 730970 TCCTTTTGGACAGCTGAGGAGGTGGACCTTTCCAAGGACATTCAGCAC--TGGGAAGCCC 730913 Query 43818 TAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACG 43877 | || || | || | | ||||||| || || |||| || ||||| || || || | Sbjct 730912 TGAAGCCTGAGGAGAGATATTTTATTTCCCATGTGCTGGCTTTCTTTGCAGCAAGAGATG 730853 Query 43878 GGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCA 43936 | ||||| |||||||| ||||| |||||| ||||||||||| ||||| || || Sbjct 730852 GCATAGTAAATGAAAACTTGGTGGAGCGGTTTAGCCAAGAAGTTCAGATTACT-GAGGCC 730794 Query 43937 CGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTT 43996 || ||||| ||||| || ||||||||||| ||||| || ||||| |||||||| ||||| Sbjct 730793 CGTTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATAGTCTC 730734 Query 43997 CTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAA 44056 || || || || ||||| |||||| | || | | | | || ||||| || || Sbjct 730733 CTCATTGACACTTACATTAAAGATTCCAAAGAAAGGGAATTTCTCTTCAATGCCATTGAG 730674 Query 44057 ACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT---AAATTCAAAT 44113 || | ||| | || | |||||||| |||||| | ||||| | | | Sbjct 730673 ACGATGCCTTGTGTGAAGAAGAAAGCAGATTGGGCCTTGCGCTGGATTGGGGACAAAGAA 730614 Query 44114 GATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGA 44173 | | | | ||||||||| | || || ||||| | ||||||||||| |||||||| || Sbjct 730613 GCTACATATGGAGAACGTGTGGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGT 730554 Query 44174 TCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCA 44233 || |||||| | ||||| ||| | ||||||||||| |||||||||| | |||||||| Sbjct 730553 TCTTTTGCGTCGATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCC 730494 Query 44234 AATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGA 44293 ||||| | || || | || || ||||| ||||| || ||||| ||| || | | | Sbjct 730493 AATGAACTTATTAGCAGAGACGAGGGCTTGCATTGTGACTTTGCCTGCCTGATGTTCAAA 730434 Query 44294 TATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTA 44353 | || | | | || ||||| ||| | | | ||| || | | | ||||| Sbjct 730433 CACCT-GTTG--CACAAATCTTCAGAACAGAGAGTAAAAGAAATAATCATCAATGCAGTT 730377 Query 44354 AAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAA-TGA 44412 | ||||||||| || || | || || | ||||| || | || || ||||| || Sbjct 730376 AGGATAGAACAGGAGTTCCTCACGGAGGCCCTGCCTGTGAAGCTCATTGGGATGAATTGC 730317 Query 44413 ACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTG 44472 || ||||||||| || || ||||| | | | |||||| | | | |||| ||||| | Sbjct 730316 AC-TTTGATGAAGCAGTACATTGAGTGCGTGGCAGATAGACTTATGCTGGAGCTGGGCT- 730259 Query 44473 CGATAAACACTATATT----GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGG 44528 | | || | || ||| |||| || ||||| ||||||||||||||||| ||| Sbjct 730258 ---TTAGCAAGGTTTTCAGAGTAGAAAATCCATTTGACTTTATGGAAAATATTTCACTGG 730202 Query 44529 AAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 | || || || ||||| ||||| || | || || || |||||| | ||||| || ||| Sbjct 730201 AGGGGAAGACTAACTTCTTTGAGAAGAGAGTAGGTGAGTATCAGAGGATGGGAGTGATG 730143 >seq350466 Length=2871019 Score = 107 bits (118), Expect = 2e-18 Identities = 96/118 (81%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||||| ||||||||||| |||||| || || || ||||| ||||| || |||||||| Sbjct 1674049 CGGTTTAGCCAAGAAGTTCAGATTACC-GAGGCCCGTTGTTTCTATGGCTTCCAAATTGC 1673991 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||| ||||| || ||||| |||||||| ||||| || || || || ||||| |||||| Sbjct 1673990 CATGGAAAACATACATTCTGAAATGTATAGTCTCCTCATTGACACTTACATTAAAGAT 1673933 Score = 105 bits (116), Expect = 5e-18 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 |||||||| | || || ||||| | ||||||||||| |||||||| || || |||||| Sbjct 1672401 GGAGAACGTGTGGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCG 1672342 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGA 44238 | ||||| ||| | ||||||||||| |||||||||| | |||||||| ||||| Sbjct 1672341 TCGATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGA 1672286 >seq348784 Length=1834159 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || || || |||||||| || ||||| | Sbjct 1473536 AAAATCCCTTTGATTTTATGGAAAACATTTCCTTAGAGGGAAAAACAAATTTCTTTGAGA 1473477 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| ||| |||||||| Sbjct 1473476 AACGAGTTTCAGAGTATCAGCG 1473455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395678336182915