Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq349686 102 9e-17 >seq349686 Length=1138722 Score = 102 bits (112), Expect = 9e-17 Identities = 174/245 (71%), Gaps = 7/245 (3%) Strand=Plus/Minus Query 59891 TCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCA 59950 ||| ||| |||||| |||||| || || || | |||||||| |||||| ||| Sbjct 730692 TCTCTTCAATGCCATTGAGACGATGCCTTGTGTGAAGAAGAAAGCAGATTGGGCCTTGCG 730633 Query 59951 GTGGAT--GAGTCCTGGA-GCATCATTTGCACAACGTCTCATAGCTTTTGCATGC-GTGG 60006 ||||| | | | || || ||| || | ||||| | |||| ||||| ||| |||| Sbjct 730632 CTGGATTGGGGACAAAGAAGCTACATATGGAGAACGTGTGGTAGCCTTTGC-TGCAGTGG 730574 Query 60007 AAGGAATCTTCTTCTCTGGCTCGTTCTGTG-CTATTTTCTGGCTCAAAAAGCGTGGCCTC 60065 |||| |||||||| || || || || || | | || ||||||||||| || || || || Sbjct 730573 AAGGCATCTTCTTTTCCGGTTCTTT-TGCGTCGATATTCTGGCTCAAGAAACGAGGACTG 730515 Query 60066 ATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAG 60125 ||||| ||||| | || ||||| || || ||| | | ||||||||| | ||| || Sbjct 730514 ATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAGACGAGGGCTTGCATTGTGAC 730455 Query 60126 TTTGC 60130 ||||| Sbjct 730454 TTTGC 730450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546008559041520