Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq349686 105 7e-18 seq350245 100 3e-16 seq350236 98.7 1e-15 seq350466 86.0 7e-12 >seq349686 Length=1138722 Score = 105 bits (116), Expect = 7e-18 Identities = 302/449 (67%), Gaps = 18/449 (4%) Strand=Plus/Plus Query 74462 ATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCAT 74521 ||| ||||| || | ||| ||||| ||||| |||||||| |||| || || || ||||| Sbjct 730161 ATACTCACCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCAT 730220 Query 74522 CCAGTCGAAAGGGTTCTTTGCACCGTAAATAG-GCTTCTCCCCAAACTGTGCCATGAGGC 74580 |||| || || || | | | | | ||| ||| |||| || ||| || | Sbjct 730221 AAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAGCCCAG-CTCCAGCATAAGTC 730279 Query 74581 GATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGC 74640 ||| ||||| | | |||||||||| |||| || ||| || ||||| || | Sbjct 730280 TATCTGCCACGCACTCAATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGCTT-C 730338 Query 74641 AC-GGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTG--GACAATCT 74697 || ||||| ||||| |||| ||||| || | || || ||||| || || | Sbjct 730339 ACAGGCAGGGCCTCCGTGAGGAACTCCTGTTCTA--TCCTAACTGCATTGATGATTATTT 730396 Query 74698 -TGTGAATGTCTTTG--GAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCA 74753 | | | | ||| | |||| | || | | |||||| | | | | | || |||| Sbjct 730397 CTTTTACTCTCTGTTCTGAAG---ATTTGTGCAACAGGTGTTTGAACATCAGGCA-GGCA 730452 Query 74754 AACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGC 74813 || || |||| |||| || |||||||| || | |||||| ||||||| ||||||||| Sbjct 730453 AAGTCACAATGCAAGCCCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGC 730512 Query 74814 ATAAGTCCACGCTTCTTCAACCAAAAGAT-GGCACAGAAGGAACCACTGAAGAAGATGCC 74872 || ||||| || ||||| | ||| || || | | || || ||||| ||||||||||| Sbjct 730513 ATCAGTCCTCGTTTCTTGAGCCAGAATATCGACGCA-AAAGAACCGGAAAAGAAGATGCC 730571 Query 74873 TTCGACACACGCAAAGGCGACAAGGCGTT 74901 ||| || |||||||| || | |||| Sbjct 730572 TTCCACTGCAGCAAAGGCTACCACACGTT 730600 >seq350245 Length=3785930 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| |||||||||||| ||||| || ||| || || || || || Sbjct 939480 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCCCCGTGAAGTCGAGTTCCAAACTGA 939539 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | ||| | ||||||| ||||||||||| ||||||||||| ||| Sbjct 939540 CCAATAGGCTGAAGCAAGTTGATGTTGTTGCTCCCCACAAAGTTCTGAGCCAAGTTCACA 939599 Query 117425 ATCGT 117429 || || Sbjct 939600 ATAGT 939604 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | ||| || ||||| ||||| || || || ||||||||||| Sbjct 939480 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCCCCGTGAAGTCGAGTTCCAAACTGA 939539 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| || | ||||| ||||||| ||||| || ||||||||||| |||||| Sbjct 939540 CCAATAGGCTGAAGCAAGTTGATGTTGTTGCTCCCCACAAAGTTCTGAGCCAAGTTCACA 939599 Query 152149 ATCGT 152153 || || Sbjct 939600 ATAGT 939604 >seq350236 Length=1702798 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/126 (79%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCA-GCAAGACGCGTACCGAATTG 117363 ||||| ||||| |||| || |||| |||||||||||| |||| | ||||| || || Sbjct 1173316 GTGAAGATGTATCGAGGACTAGCAGAGTCCTTGCCACCATGCAA-CCTGGTACCAAACTG 1173374 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 ||| | |||| ||| |||||||| || ||| |||||||||||| |||||||| |||| Sbjct 1173375 ACCAATGGGCTGCAAAAGGTTCAGATTATTGCTGCCCACAAAGTTCTGAGCCAAATTGAT 1173434 Query 117424 AATCGT 117429 ||| || Sbjct 1173435 AATGGT 1173440 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | || || | ||||||||||| || || || |||||||| Sbjct 1173316 GTGAAGATGTATCGAGGACTAGCAGAGTCCTTGCCACCATGCAACCTGGTACCAAACTGA 1173375 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| | ||||| || || ||| |||||| || |||||||||||||| | | Sbjct 1173376 CCAATGGGCTGCAAAAGGTTCAGATTATTGCTGCCCACAAAGTTCTGAGCCAAATTGATA 1173435 Query 152149 ATCGT 152153 || || Sbjct 1173436 ATGGT 1173440 >seq350466 Length=2871019 Score = 86.0 bits (94), Expect = 7e-12 Identities = 99/131 (76%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 || |||||||| || | |||||| ||||||| ||||||||||| ||||| || ||||| Sbjct 1672268 TCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 1672327 Query 74832 AACCAAAAGAT-GGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGC 74890 | ||| || || | | || || ||||| |||||||||||||| || |||||||| Sbjct 1672328 AGCCAGAATATCGACGCA-AAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGC 1672386 Query 74891 GACAAGGCGTT 74901 || | |||| Sbjct 1672387 TACCACACGTT 1672397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544705762883400