Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq350759 187 2e-42 >seq350759 Length=3492976 Score = 187 bits (206), Expect = 2e-42 Identities = 138/161 (86%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| ||||| ||||| |||||||| |||||| |||||||||| |||||||| | |||| Sbjct 2680795 GATCTGCCTCTCATGGCCCTCCCCCCATGCCACGCCCTCTGCCAGTTCTACGTGGTGAAT 2680854 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 |||||||||||||||||| | || || || |||||||||||||| | || ||||| ||| Sbjct 2680855 GGGGAGCTGTCCTGCCAGTTGTACCAGCGGTCGGGAGACATGGGCCTGGGTGTGCCCTTC 2680914 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 |||||||| || ||||| |||||||| ||||||||||| || Sbjct 2680915 AACATTGCCAGCTACGCCCTGCTCACCTACATGATCGCACA 2680955 Score = 187 bits (206), Expect = 2e-42 Identities = 138/161 (86%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| |||||||| ||||| || ||||||||||| ||||| || | ||| Sbjct 2680955 TGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGCACACCCAGGCCC 2680896 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||||||||| || || || | |||||||||||||||||||||| | |||||||| ||| Sbjct 2680895 ATGTCTCCCGACCGCTGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAGAACTGG 2680836 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| |||||| |||||||| ||||| ||||| ||||| Sbjct 2680835 CAGAGGGCGTGGCATGGGGGGAGGGCCATGAGAGGCAGATC 2680795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446206091495760