Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq348463 212 5e-50 seq350482 187 2e-42 seq350122 118 9e-22 seq350049 113 4e-20 >seq348463 Length=257100 Score = 212 bits (234), Expect = 5e-50 Identities = 303/427 (71%), Gaps = 0/427 (0%) Strand=Plus/Minus Query 2263 AAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCAGG 2322 ||||||||| | || ||||||| || ||||| ||||| || |||| || | | Sbjct 8746 AAACAGAATTTGGTGATTATGGTTAGGAAGACCTGGTTCTCCATTCCAGAGAAGAATCGA 8687 Query 2323 CCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGG 2382 ||||| || ||||||| ||| | |||||||||||| | || || || || ||| || Sbjct 8686 CCTTTAAAGGACAGAATTAATATAGTTCTCAGTAGAGAACTCAAGGAACCTCCAAAGGGA 8627 Query 2383 GCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCAGAATTA 2442 ||||| ||| |||| |||||| | ||| | || | ||| |||| || ||||||||| Sbjct 8626 GCTCATTTTCTTGCCAAAAGTCTGGATGATGCCTTAGAACTTATTGAAGATCCAGAATTA 8567 Query 2443 AAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCATT 2502 | | | | || || | |||||||| | || || || ||||| ||| |||| ||| Sbjct 8566 ACAAATAAAGTAGACGTGGTTTGGATAGTGGGAGGCAGTTCTGTTTATAAGGAAGCCATG 8507 Query 2503 ACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGAT 2562 | | | | || | | || ||| | |||||||| ||||| |||||||| ||||| Sbjct 8506 AACAAACCAGGCCATGTTAGACTATTTGTGACAAGGATCATGCAAGAATTTGAAAGTGAT 8447 Query 2563 ACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAGGTGTT 2622 || | |||||||||||| || || ||||| |||| ||| | |||| |||||||||| Sbjct 8446 ACGTTTTTCCCAGAAATTGATTTTGAAAAATATAAACTTCTTCCAGAATATCCAGGTGTT 8387 Query 2623 CCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGaaaaaaaa 2682 || | | || || || ||||| || |||| ||||||||||| |||||||||| || Sbjct 8386 CCTTTGGATGTTCAGGAGGAAAAAGGCATTAAGTACAAATTTGAAGTATATGAAAAGAAC 8327 Query 2683 aCATAAT 2689 | |||| Sbjct 8326 AATTAAT 8320 >seq350482 Length=687177 Score = 187 bits (206), Expect = 2e-42 Identities = 195/256 (76%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1275 CCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATG 1334 || || |||||| | ||||| |||||||||||| | || || |||||||||||||||| Sbjct 42168 CCCCAGGAAGTTTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCAGAAAACATG 42227 Query 1335 GCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAAC 1394 ||| | || | |||| |||||||| || ||||| || ||||| || || || ||| Sbjct 42228 ATCACCTACAGCGAGAACCATGGGGTTGTAGTCCAGCCTGCCTACAAGGACAAGATAAAC 42287 Query 1395 ATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGAT 1454 || || |||| ||||| ||| |||| || ||||||||||| || || ||||| ||| Sbjct 42288 ATCACCCAGCTGGGACTCATGAACTCAACCATTACCTTCTGGAATACCACCTTGGAAGAT 42347 Query 1455 GAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGG 1514 || | ||| |||||||| | ||||| || ||||| ||||| ||||| |||||||||| Sbjct 42348 GAGGCGTGTTACAAGTGCCTCTTTAATACCTTTGGTTCTGGAAAGATCTCAGGAATAGCC 42407 Query 1515 TGTCTAACCCTTTTTG 1530 || || || || |||| Sbjct 42408 TGCCTCACTCTCTTTG 42423 >seq350122 Length=1380883 Score = 118 bits (130), Expect = 9e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 2462 TTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCATTA-CAAGATCTTGCAAACAG 2520 |||||||| | || || || ||||||| |||| ||| | |||| | || | | Sbjct 530724 TTTGGATAGTGGGAGGCAGTTCTGTCTGCAAGGAATCCATAAACAAGC-CAGGCCATCTT 530782 Query 2521 ATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATACATACTTCCCAGAAATT 2580 | || ||| | |||||||| ||||| |||||||| ||||||||| || ||||||||| Sbjct 530783 AGACTATTTGTGACAAGGATCATGCAAGAATTTGAAAGTGATACATTTTTTCCAGAAATT 530842 Query 2581 AATCTTACCAAATACAAACAACTTACTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAA 2640 || || || |||| || | |||| |||||||||||| |||| || || || Sbjct 530843 GATTCGGAAAAGTATAAACTTCTCCCAGAATATCCAGGTGTTCCTTCTGATGTCCAGGAG 530902 Query 2641 GAAAATGGAATTAGATACAAATTTGAGATATATGaaaaaaaaaCATAAT 2689 ||||| || |||| ||||||||||| |||||||||| || | |||| Sbjct 530903 GAAAAAGGCATTAAGTACAAATTTGAAGTATATGAAAAGAACAATTAAT 530951 >seq350049 Length=3988161 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | || ||||| |||||||||||||| || || ||||||||| Sbjct 3050113 GTGGTGGAGGAGCTCTTCAGGGACGGGGTGAACTGGGGGCGCATCGTGGCCTTCTTTGAG 3050054 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || || || || ||||||||||| |||||||| | | || | |||| || |||| | Sbjct 3050053 TTCGGAGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAGC 3049994 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 3049993 ATCGCCCTGTGGATGACCGA 3049974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412623008862412