Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq350557 120 3e-22 >seq350557 Length=1960230 Score = 120 bits (132), Expect = 3e-22 Identities = 171/238 (72%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| |||| | || | |||||| || || ||| |||||| || ||||| ||||| | Sbjct 910644 GCCGCCTCGCAGACGAAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAATCTGA 910703 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGG 39175 || || || | || || ||||||||||| || || || || ||||||||||| ||||| Sbjct 910704 CAGAGTGCGGCCATCCTCCAGCTGTTTGCCAGCGAAGATCAGCCGCTGCTGGTCAGGTGG 910763 Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235 | | || ||| ||||| |||||| ||||| || | | || || || | ||| | Sbjct 910764 G-ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGA 910822 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACGCC 39293 | || | ||||| | || |||||||| || || |||||||| ||||||| | |||| Sbjct 910823 CCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATCTCTGCGCC 910880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427624412067479