Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq349686 345 4e-90 seq350190 113 4e-20 seq350466 104 2e-17 seq348784 89.7 4e-13 seq135009 89.7 4e-13 >seq349686 Length=1138722 Score = 345 bits (382), Expect = 4e-90 Identities = 599/866 (69%), Gaps = 10/866 (1%) Strand=Plus/Plus Query 4271 TACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAA 4330 ||||| ||| || ||||| ||||| || || || | ||||||||||||||||| ||||| Sbjct 730170 TACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCATAAAGTCAAA 730229 Query 4331 CGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTAC 4390 ||||| | | || || || | | || | | | | || || || || Sbjct 730230 TGGATTTTCTACTCTGAAAACCTTGCTAAAGCCCAGCTCCAGCATAAGTCTATCTGCCAC 730289 Query 4391 AAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCGC 4450 | || || ||||| |||| | ||| || || ||||| | ||||||| || || Sbjct 730290 GCACTCAATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGCTTCACAGGCAGGGC 730349 Query 4451 GTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATC 4510 | || | ||||| |||||||| | || || | ||||||| ||||||| | | | Sbjct 730350 CTCCGTGAGGAACTCCTGTTCTATCCTAACTGCATTGATGATTATTTCTTTTACTCTCTG 730409 Query 4511 TTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACC 4570 || || | ||| | | | || | |||| | || ||||| ||||||||||| || Sbjct 730410 TTCTGAAGATTTGTGCAACAGGTGTTTGAACATCAGGCAGGCAAAGTCACAATGCAAGCC 730469 Query 4571 TTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTT 4630 |||||||||||||| ||||| || |||||||| | || ||||| | |||| || || Sbjct 730470 CTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTT 730529 Query 4631 AAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGC 4690 ||||| ||||| | ||||| || || |||||||| |||||||| || || ||||| || Sbjct 730530 GAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGC 730589 Query 4691 TACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAG 4749 ||| | || || | | |||| ||||||| |||||| || ||||| | | Sbjct 730590 TACCACACGTTCTCCATATGTAGCTT-CTTTGTCCCCAATCCAGCGCAAGGCCCAATCTG 730648 Query 4750 CTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA---ATTTACTTTTTTCAA 4806 |||| ||||| || || || || || | || || || || | ||| |||| || Sbjct 730649 CTTTCTTCTTCACACAAGGCATCGTCTCAATGGCATTGAAGAGAAATTCCCTTTCTT--- 730705 Query 4807 ATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCT 4865 ||| |||| ||| |||||||| || || || |||||||||||||||||||| ||||| Sbjct 730706 -TGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCC 730764 Query 4866 ATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAAT 4925 || ||||| || || || || || || | || || || | |||||||| | | ||| Sbjct 730765 ATGGCAATTTGGAAGCCATAGAAACAACGGGCCTCAGTAATCTGAACTTCTTGGCTAAAC 730824 Query 4926 CTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGA 4985 | || || |||||||| |||||||| || || || |||||||| || |||| ||||| Sbjct 730825 CGCTCCACCAAGTTTTCATTTACTATGCCATCTCTTGCTGCAAAGAAAGCCAGCACATGG 730884 Query 4986 GATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAA 5045 || ||||| || || |||||||| || || |||||| | | || || | | Sbjct 730885 GAAATAAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGG 730944 Query 5046 TCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCA 5105 || || || ||| | |||||||| || || || ||||| || ||||| |||||||||| Sbjct 730945 TCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCA 731004 Query 5106 GGATACTGAATCGGAAGTATGACAAA 5131 | || | || |||| |||||||| Sbjct 731005 TGGTATTCGATAGGAAAGATGACAAA 731030 >seq350190 Length=1929044 Score = 113 bits (124), Expect = 4e-20 Identities = 122/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 || ||| || ||||| || ||||| || | | ||||| |||||||| ||| || | || Sbjct 1511607 AGTGCTTGTGAAAACTGACATTCAGATAGCCCTTCCTTCTGGGTGCTATGGAAGAGTGGC 1511548 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 |||| | ||||| ||||||| ||| ||| || || || || || ||||| |||||| Sbjct 1511547 TCCTCGTTCTGGCTTGGCAGCAGAACCCTTCATAGATGTAGGAGCTGGTGTCATAGATGA 1511488 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG 31926 | | |||||||| || ||||| |||| ||||||||||||| Sbjct 1511487 ATATTATAGAGGGAATGTTGGTGTTGTCCTGTTTAATTTTGG 1511446 >seq350466 Length=2871019 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 |||||||||||||| ||||| || |||||||| | || ||||| | |||| || || Sbjct 1672268 TCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 1672327 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || || |||||||| |||||||| || || ||||| ||| Sbjct 1672328 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 1672387 Query 4692 AC 4693 || Sbjct 1672388 AC 1672389 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| |||||||| || || || |||||||||||||||||||| ||||| || ||| Sbjct 1673934 TCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 1673993 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || || || || || | || || || | |||||||| Sbjct 1673994 ATTTGGAAGCCATAGAAACAACGGGCCTCGGTAATCTGAACTTC 1674037 >seq348784 Length=1834159 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 4932 ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATA 4991 || || ||||| || || || || ||||||||||||||||| || || | ||||| ||| Sbjct 1489244 ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGAGAGATA 1489303 Query 4992 AAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050 || |||| || || | ||||| || |||||||| || | ||| || | ||||||||| Sbjct 1489304 AAATACTTCTCTTCCGATTTAAGCTTGTTCCAGTGAGGAAGATCCTTTGATAAATCAAC 1489362 >seq135009 Length=631 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 4932 ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATA 4991 || || ||||| || || || || ||||||||||||||||| || || | ||||| ||| Sbjct 176 ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGAGAGATA 117 Query 4992 AAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050 || |||| || || | ||||| || |||||||| || | ||| || | ||||||||| Sbjct 116 AAATACTTCTCTTCCGATTTAAGCTTGTTCCAGTGAGGAAGATCCTTTGATAAATCAAC 58 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425139575690339