Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq349686 468 7e-127 seq348299 132 7e-26 seq350190 96.9 5e-15 seq349196 91.5 2e-13 seq350009 89.7 7e-13 seq350466 86.0 9e-12 >seq349686 Length=1138722 Score = 468 bits (518), Expect = 7e-127 Identities = 638/890 (72%), Gaps = 3/890 (0%) Strand=Plus/Plus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| |||||||| | ||||| ||||| || | ||||| || || ||||| || || Sbjct 730141 GACATCACTCCCATCCTCTGATACTCACCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 730200 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAAT 47954 |||| ||| |||||||||||||| ||||||||||| || | | ||| || |||| Sbjct 730201 TCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAG 730260 Query 47955 CCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAA 48014 || | || || ||||||||||| ||| | || || || ||||||| ||| Sbjct 730261 CCCAGCTCCAGCATAAGTCTATCTGCCACGCACTCAATGTACTGCTTCATCAAAGTGCAA 730320 Query 48015 TTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACA 48074 ||||| || || || || || || || |||||||| || ||||| ||||| || | || Sbjct 730321 TTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACT 730380 Query 48075 GCATCCACTATTATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAAC 48134 |||| | ||||| | |||| | | || | | | ||||| ||||| ||| Sbjct 730381 GCATTGATGATTATTTCTTTTACTCTCTGTTCTGAAGATTTGTGCAACAGGTGTTTGAAC 730440 Query 48135 ATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAAT 48194 || | || ||||| |||||||| | || || ||||| ||||| | ||| || ||||| Sbjct 730441 ATCAGGCAGGCAAAGTCACAATGCAAGCCCTCGTCTCTGCTAATAAGTTCATTGGAAAAC 730500 Query 48195 GTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAA 48254 ||||| || ||||| ||||| ||||| |||||||| ||||| | ||| ||||| || ||| Sbjct 730501 GTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGACGCAAAAGAACCGGAA 730560 Query 48255 AAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTG 48314 ||||| |||||||| || || ||||| || | | ||||| || | ||||| ||| Sbjct 730561 AAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTTTG 730620 Query 48315 TGT---ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATA 48371 | ||||| || |||||||| || |||||||| ||||||||||| || || || Sbjct 730621 TCCCCAATCCAGCGCAAGGCCCAATCTGCTTTCTTCTTCACACAAGGCATCGTCTCAATG 730680 Query 48372 GCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTA 48431 ||||| |||||||| | |||| ||| |||||||| |||||| || || | |||||| Sbjct 730681 GCATTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTA 730740 Query 48432 TACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCT 48491 |||||||| || || || ||||| || || || || || || || ||||| | || || Sbjct 730741 TACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAACGGGCCTCA 730800 Query 48492 GTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTA 48551 || ||||| || || | ||| || || |||| || ||||||||||| ||||| || Sbjct 730801 GTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCTCTT 730860 Query 48552 GCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTC 48611 || ||||| || || | ||||| |||||||||| | || | | |||| | | Sbjct 730861 GCTGCAAAGAAAGCCAGCACATGGGAAATAAAATATCTCTCCTCAGGCTTCAGGGCTTCC 730920 Query 48612 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCT 48671 |||| | || || || || | || || || |||||||||||||| || ||||| ||| Sbjct 730921 CAGTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCT 730980 Query 48672 TTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721 || |||||||| | ||| |||||| ||||| ||| || || || ||||| Sbjct 730981 TTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAA 731030 >seq348299 Length=121795 Score = 132 bits (146), Expect = 7e-26 Identities = 109/133 (82%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | || Sbjct 67439 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATTGAC 67498 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| |||||||| || || |||||||||||||| ||||| || || | | |||||| Sbjct 67499 TCATTATTTCCCAATATCTGGGCAGTAGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 67558 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 67559 TTTCTTACACCAT 67571 Score = 96.9 bits (106), Expect = 5e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| | |||||||| || ||| Sbjct 86830 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACCTCTCAGAAAGAAGGTTG 86889 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || ||||||||||| | || || || || ||||| || || | ||| | ||||||| Sbjct 86890 TAGGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 86949 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 || || || ||||||||| || Sbjct 86950 ATGTGTTGTGGTCTTTCAGCC 86970 >seq350190 Length=1929044 Score = 96.9 bits (106), Expect = 5e-15 Identities = 177/257 (69%), Gaps = 12/257 (5%) Strand=Plus/Plus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 ||||||||| ||||| ||| ||| | | |||||||| |||||| | ||| |||||| Sbjct 1511315 TCCAGTGGAACCAAAGCCTCTTGAAC--CCCTTTCAGTGTCATCTAAAACTTGAACTTCC 1511372 Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993 | | || || ||| |||| |||| | | | || || || |||| | | | || Sbjct 1511373 TCTATTTCTGGGTAAAATATCCGTTCACAAGTGAGCTGTGCAATTCAAAC-----TTTTG 1511427 Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053 | |||||| | ||||| ||| ||| | ||| | || |||| |||||||||||| | Sbjct 1511428 ACTTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTCCCTCTATAATAT 1511487 Query 46054 TCATCTATTACTCCCCCTCCCACATC---GATACCTTTTAGAGACAGTCCAGATCTAGGA 46110 |||||||| || || |||| ||||| || || | | || ||||| | |||| Sbjct 1511488 TCATCTATGACACCAGCTCCTACATCTATGAAGGGTTCTGCTGCCAAGCCAGAACGAGGA 1511547 Query 46111 GCTATTCTTCCATAACA 46127 || | ||||||||| || Sbjct 1511548 GCCACTCTTCCATAGCA 1511564 >seq349196 Length=2172811 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/202 (70%), Gaps = 1/202 (0%) Strand=Plus/Plus Query 45876 TCCAGTGGATCCAAATCCTTGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCCTT 45935 ||||||||| ||||| ||| | || |||||||| ||||| | ||| || |||| Sbjct 832269 TCCAGTGGAACCAAAACCTCCTGAATCCCTTTCAGTGTTATCTAAAACTTGAACATCCTC 832328 Query 45936 CAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTTAT 45995 | ||||||||| |||| || | | | || || || || ||||||| | || | Sbjct 832329 TATTTCAGGATAAAATATCTATTCACAAAA-AGCTGTGCAGTTTGATCACCCTTTTTGAC 832387 Query 45996 TTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCTTC 46055 |||||| | ||||| ||| ||| || | || ||||| | |||||||||||||| Sbjct 832388 TTCAAACCTTTCTTTGCCAAAATTACATAGTACAACACCAATGCTTCCTCTATAATCTTC 832447 Query 46056 ATCTATTACTCCCCCTCCCACA 46077 |||||| || || |||||||| Sbjct 832448 ATCTATGACACCAGCTCCCACA 832469 >seq350009 Length=3793559 Score = 89.7 bits (98), Expect = 7e-13 Identities = 136/191 (71%), Gaps = 7/191 (4%) Strand=Plus/Minus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 |||||| || |||| ||| ||| | | |||||||| ||||| || ||| ||| || Sbjct 2434605 TCCAGTAGAACCAAGACCTCCTGAAC--CCCTTTCAGTGTTATCTAAAGCTTGAACTACC 2434548 Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993 | | || || ||| |||| | || | | || ||||| || |||| ||||||| | || Sbjct 2434547 TCAATTTCTGGGTAAAATATCCATTCAGAAATAAGTTGTGCAATTCAATCACCCTTTTTG 2434488 Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053 | |||||| | ||||| ||| ||| | ||||| || |||| ||||||||||| Sbjct 2434487 ACTTCAAACTTTTCTTTGCCAAAATTAAACAGAACAACACCAACAT---CTCTATAATCT 2434431 Query 46054 TCATCTATTAC 46064 |||||||| || Sbjct 2434430 TCATCTATGAC 2434420 >seq350466 Length=2871019 Score = 86.0 bits (94), Expect = 9e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| |||||||| | ||||| || || || | ||||| || || ||||| || || Sbjct 1670467 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 1670526 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATT 47929 |||| ||| |||||||||||||| ||||||||||| Sbjct 1670527 TCCAGTGAAATATTTTCCATAAAGTCAAATGGATT 1670561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691482154497120