Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq349686 475 5e-129 seq348299 127 3e-24 seq348784 107 3e-18 seq350466 86.0 9e-12 >seq349686 Length=1138722 Score = 475 bits (526), Expect = 5e-129 Identities = 668/934 (72%), Gaps = 8/934 (1%) Strand=Plus/Plus Query 46284 TTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTTT 46340 ||| |||||| |||| || | ||| ||| ||| | |||||| |||||||| | Sbjct 730098 TTAGAAGTCGGCATCCAAGGTAAAGGAATTCTCTGTCGGACTTGACATCACTCCCATCCT 730157 Query 46341 TTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 46400 || || |||||||| | ||||| || || ||||| || || |||| ||| |||||||| Sbjct 730158 CTGATACTCACCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTC 730217 Query 46401 CATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATCAG 46460 |||||| ||||| ||||| || | ||| || |||| || | || || || Sbjct 730218 CATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAGCCCAGCTCCAGCATAAG 730277 Query 46461 TCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTT 46520 ||||||||| ||| | || || ||| ||||||| |||||||| || ||||| || Sbjct 730278 TCTATCTGCCACGCACTCAATGTACTGCTTCATCAAAGTGCAATTCATCCCAATGAGCTT 730337 Query 46521 GACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGAT-ATTATCG 46579 || || || |||||||| || ||||| ||||| || | || |||| ||| ||||| Sbjct 730338 CACAGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAACTGCATT-GATGATTATTT 730396 Query 46580 ATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAAT 46639 | ||||| | | || | | |||| || ||||| ||||| | || ||||| | Sbjct 730397 CTTTTACTCTCTGTTCTGAAGATTTGTGCAACAGGTGTTTGAACATCAGGCAGGCAAAGT 730456 Query 46640 CACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTA 46699 ||||||| | ||| || ||||| ||||| | ||| || ||||| ||||| |||||||| | Sbjct 730457 CACAATGCAAGCCCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCA 730516 Query 46700 GTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTA 46759 |||| || || |||||||| ||||| | ||| ||||| || |||||||| |||||||| | Sbjct 730517 GTCCTCGTTTCTTGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCA 730576 Query 46760 CAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATG---AATCCACCTTT 46816 | || || || || || | | ||||| || | || || || | |||||| | Sbjct 730577 CTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCTTCTTTGTCCCCAATCCAGCGCA 730636 Query 46817 GAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGt 46876 |||||||| || || ||||| ||||||||||| || || || ||||| |||||||| | Sbjct 730637 AGGCCCAATCTGCTTTCTTCTTCACACAAGGCATCGTCTCAATGGCATTGAAGAGAAATT 730696 Query 46877 ttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAA 46936 |||| | |||||||| || || || || | |||||||||||||| ||||| | Sbjct 730697 CCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTA 730756 Query 46937 TGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTG 46996 ||||||| || || || || || || || ||||| | || ||||||||||| || ||| Sbjct 730757 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAACGGGCCTCAGTAATCTGAACTTCTT 730816 Query 46997 TACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCA 47056 | ||| || || ||| || ||||| ||||| ||||| || || ||||| || |||| Sbjct 730817 GGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCATCTCTTGCTGCAAAGAAAGCCA 730876 Query 47057 ATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTT 47116 ||||| |||||||||| | || || | |||| | ||||| | || || | Sbjct 730877 GCACATGGGAAATAAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCT 730936 Query 47117 TTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCC 47176 | || | || || || ||||||||||| || || ||||| ||||| |||||||| | || Sbjct 730937 TGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCC 730996 Query 47177 ATATATCACGATATTGGATCGGAAAAATAACAAA 47210 | |||||| | |||| ||| ||||| || ||||| Sbjct 730997 AAATATCATGGTATTCGATAGGAAAGATGACAAA 731030 >seq348299 Length=121795 Score = 127 bits (140), Expect = 3e-24 Identities = 108/133 (81%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | || Sbjct 67439 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATTGAC 67498 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| |||||||| || || ||||| |||||||| ||||| || || | | |||||| Sbjct 67499 TCATTATTTCCCAATATCTGGGCAGTAGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 67558 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 67559 TTTCTTACACCAT 67571 Score = 105 bits (116), Expect = 9e-18 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || |||| ||| || ||||| ||||| | || || ||||| || || || || || || Sbjct 91131 CTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCAGGATG 91190 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||||||||| || | ||||| |||| || ||| | || || || |||||||| | | Sbjct 91191 GCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCGGCTGTCTCAGCAGCCAAAGTATCCAGT 91250 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 || | |||||| || || | |||| ||||| || |||||||||| Sbjct 91251 TCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCATGG 91296 >seq348784 Length=1834159 Score = 107 bits (118), Expect = 3e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||||||||| || || | || || ||||| ||||| |||||||| ||||| | || | Sbjct 1483988 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCT 1484047 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | ||||| |||||||| || |||||||| || ||||| || ||||||||||| || || | Sbjct 1484048 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCGGCAAAGG 1484107 Query 46772 CGAC 46775 | || Sbjct 1484108 CCAC 1484111 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 ||| ||||| || |||||||| ||||||| ||| ||||||||||| ||||| || ||| | Sbjct 1493984 TACCTCTTCCGCCGTCCAGAAGGACGCCTGTGCCTTTTTATACATTTTCCAAATGTCAGG 1494043 Query 47187 ATATTGGATCGGAAAAATAACAAATC 47212 || ||||| ||||| || || |||| Sbjct 1494044 GTACTGGATTGGAAAGATGACGAATC 1494069 >seq350466 Length=2871019 Score = 86.0 bits (94), Expect = 9e-12 Identities = 102/138 (74%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 46284 TTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTTT 46340 ||| |||||| |||| || | ||| ||| ||| | |||||| |||||||| | Sbjct 1670424 TTAGAAGTCGGCATCCAAGGTAAAGGAATTCTCTGTCGGACTTGACATCACTCCCATCCT 1670483 Query 46341 TTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 46400 || || || ||||| | ||||| || || ||||| || || |||| ||| |||||||| Sbjct 1670484 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTC 1670543 Query 46401 CATAAAATCAAACGGATT 46418 |||||| ||||| ||||| Sbjct 1670544 CATAAAGTCAAATGGATT 1670561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 709663964938560