Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bubalus_20bubalis_20[refseq_20GCF_5F000471725.1_202013-09-30] 366,983 sequences; 2,836,166,969 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq349686 242 4e-59 seq236293 201 1e-46 seq236311 145 8e-30 seq348784 107 2e-18 seq350466 93.3 4e-14 seq349266 87.8 2e-12 >seq349686 Length=1138722 Score = 242 bits (268), Expect = 4e-59 Identities = 596/896 (67%), Gaps = 16/896 (2%) Strand=Plus/Plus Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTT-TCGAAAAAATTTGTCTTACCCT 23263 ||| || ||||| | ||||| || || || | |||| || || || || ||||| |||| Sbjct 730143 CATCACTCCCATCCTCTGATACTCACCTACTC-TCTTCTCAAAGAAGTTAGTCTTCCCCT 730201 Query 23264 CTAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTT--TACA 23321 | | ||| |||||||||||||| ||||||||||| || | | | | ||| || | Sbjct 730202 CCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTC--TACTCTGAAAACCTTGCTAAA 730259 Query 23322 TGATAATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATA 23381 | ||| | ||| |||||||| || | ||||| || || ||||||| | Sbjct 730260 GCCCAGCTCCAGCATAAGTCTATCTGCCACGCACTCAATGTACTGCTTCATCAAAGTGCA 730319 Query 23382 GTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAAC 23441 || || || || || || || || | || || | ||| | ||| || ||| Sbjct 730320 ATTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTGAGGAACTCCTGTTCTATCCTAAC 730379 Query 23442 AGCATCTTTAATTATTTGAACAATAACT-TCTTCACTAGGTGGATATTTTAAATAC---- 23496 |||| | ||||||| | | ||| ||| || | ||| | | || | Sbjct 730380 TGCATTGATGATTATTT---CTTTTACTCTCTGTTCT--GAAGATTTGTGCAACAGGTGT 730434 Query 23497 TTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTA 23556 || |||| | || ||||| |||||||| | ||| || || || ||||| | |||||| Sbjct 730435 TTGAACATCAGGCAGGCAAAGTCACAATGCAAGCCCTCGTCTCTGCTAATAAGTTCATTG 730494 Query 23557 GAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGAT 23616 ||||| || | || ||||| | ||||||||| || | ||| ||||| | ||||| || Sbjct 730495 GAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGACGCAAAAGAA 730554 Query 23617 CCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCA 23676 ||||||||||| || || || || || |||||||| || | |||| ||| |||| || Sbjct 730555 CCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACCACACGTTCTCCATATGTAGCT 730614 Query 23677 TTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTT 23736 | | || |||||| | ||||| || ||| || ||||| || || Sbjct 730615 TCTTTGTCCCCAATCCAGCGCAAGGCCCAATCTGCTTTCTTCTTCACACAAGGCATCGTC 730674 Query 23737 TCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGT 23796 ||||| || || |||||||| |||||| |||| | || || || ||||| || Sbjct 730675 TCAATGGCATTGAAGAGAAATTCCCTTTCTTTGGAATCTTTAATGTAAGTGTCAATGAGG 730734 Query 23797 AAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTA 23856 | |||||||||||||||||| || ||||| || ||||| || || ||||| ||||| | Sbjct 730735 AGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAACGG 730794 Query 23857 GCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCA 23916 || |||| | ||||| || | ||| | | | || ||||| || || || ||| Sbjct 730795 GCCTCAGTAATCTGAACTTCTTGGCTAAACCGCTCCACCAAGTTTTCATTTACTATGCCA 730854 Query 23917 TCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAAT 23976 || || || ||||||||||| || |||| ||||||| ||| || |||| | Sbjct 730855 TCTCTTGCTGCAAAGAAAGCCAGCACATGGGAAATAAAATATCTCTCCTCAGGCTTCAGG 730914 Query 23977 TTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCC 24036 || ||| | | ||| || || || | || || || ||| |||||||||| ||| Sbjct 730915 GCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCCTCAGCTGTCCAAAAGGAAGCC 730974 Query 24037 AAGGCACGCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAA 24092 || ||||||||| |||||||||||| | || || ||||| || || || Sbjct 730975 TCAGCTTTCTTATACATCTGCCAAATATCATGGTATTCGATAGGAAAGATGACAAA 731030 >seq236293 Length=300 Score = 201 bits (222), Expect = 1e-46 Identities = 141/161 (88%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 ||||||||||| ||||||||||||||| |||||| |||||| ||||||||||||||| | Sbjct 163 TCTCACTCTGTCGCCCAGGCTGGAGTGTAGTGGCGCGATCTCAGCTCACTGCAACCTCTG 104 Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAA 8463 ||||||| ||||||| |||||||||||||||||||| ||||||||||| |||||| | Sbjct 103 CCTCCCGAGTTCAAGAAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGTAC 44 Query 8464 AAGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGA 8504 | ||||||| ||| |||||||| |||| |||||||||||| Sbjct 43 ATGCCACCATGCCCCGCTAATTTGTGTAATTTTAGTAGAGA 3 Score = 111 bits (122), Expect = 2e-19 Identities = 91/111 (82%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 8523 GCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTG 8582 ||||| ||||||| ||||| ||||||||| ||||| |||| || || |||||||||| || Sbjct 300 GCCAGACTGGTCTTGAACTGCTGACCTCAAGTGATTCACCCGCTTCTGCCTCCCAAAATG 241 Query 8583 CTGGGATTACAGGCATGAGCCACCGCGCCTGGCCCTTTAAAAAGTTTTCTT 8633 |||||||||||||| ||||||||| ||| |||| | ||| |||||| Sbjct 240 CTGGGATTACAGGCGTGAGCCACCATGCCCAGCCCCAAATAAATCTTTCTT 190 >seq236311 Length=484 Score = 145 bits (160), Expect = 8e-30 Identities = 106/123 (86%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 8494 TTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATG 8553 |||||||| || |||||| ||||||||||||||||||||||||||||||| ||||| | Sbjct 1 TTTAGTAGGGACGAGGTTTCGCCATGTTGGCCAGGCTGGTCTCGAACTCCTGTCCTCAGG 60 Query 8554 TGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCTG 8613 |||| | || |||||||||||||||||||| |||||||||| ||| |||| | ||| | | Sbjct 61 TGATGCGCCCGCCTCGGCCTCCCAAAGTGCCGGGATTACAGCCATAAGCCGCTGCGGCCG 120 Query 8614 GCC 8616 ||| Sbjct 121 GCC 123 >seq348784 Length=1834159 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 23531 CTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTT 23590 ||||||| || || || | ||||| ||||| || | ||| ||||| | ||||| ||| | Sbjct 1483988 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCT 1484047 Query 23591 TAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGG 23650 | | ||| ||||| |||||||| ||||| || |||||||| || || ||||| ||||||| Sbjct 1484048 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCGGCAAAGG 1484107 Query 23651 CCAC 23654 |||| Sbjct 1484108 CCAC 1484111 >seq350466 Length=2871019 Score = 93.3 bits (102), Expect = 4e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 || || || ||||| | |||||| ||||| || | || ||||| | ||||||||| || Sbjct 1672268 TCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 1672327 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | ||| ||||| | ||||| || ||||||||||| || || || || || |||||||| Sbjct 1672328 AGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 1672387 Query 23653 ACAAGACGT 23661 || | |||| Sbjct 1672388 ACCACACGT 1672396 >seq349266 Length=2450084 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 8537 GAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGC 8596 |||||||||| |||| | ||||| || ||||| ||||||| | ||||||||||||||| Sbjct 1443908 GAACTCCTGAGCTCAAGCGATCCTCCAGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGC 1443967 Query 8597 ATGAGCCACCGCGCCTGGCCC 8617 | | ||||||||||| ||||| Sbjct 1443968 ACGCGCCACCGCGCCCGGCCC 1443988 Score = 82.4 bits (90), Expect = 8e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 8387 GCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTA 8446 || ||||||| || |||| | | |||||| || |||| |||||||||||| ||||| Sbjct 1443893 GCGCACTGCAGCCCAGAACTCCTGAGCTCAAGCGATCCTCCAGCCTCAGCCTCCCGAGTA 1443952 Query 8447 GCTGGGATTACAGGCAAAAGCCACCACGCC 8476 |||||||||||||||| |||||| |||| Sbjct 1443953 GCTGGGATTACAGGCACGCGCCACCGCGCC 1443982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 519095784616200