Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq8060 100 3e-16 seq6502 93.3 4e-14 seq4475 93.3 4e-14 >seq8060 Length=598348 Score = 100 bits (110), Expect = 3e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 124440 TGGACGTTGTAAAAATAGGCAAGGATCCCAGTAAGATACCCGATTGGTTGATCGTTAACA 124499 ||||| | || || || ||||||||||||| ||||||||| ||| ||| | || | Sbjct 343431 TGGACATGGTGAAGATCAGCAAGGATCCCAGCAAGATACCCAGCTGGCTGAAAATCAATA 343490 Query 124500 AGACGTACTATCCGGATTTCGTCGTAAAAGATCCTAAGAAAGCTCCCGTGTGGGAGATAT 124559 ||| ||||| || |||||| |||| ||| || ||||||||| ||||||||||||| Sbjct 343491 AGATCTACTACCCTGATTTCATCGTCCCAGACCCAAAGAAAGCTGCCGTGTGGGAGATCA 343550 Query 124560 CAGGAGCCAGTTTCTCATCATCTCCCAATCATACGGCTAACGGTATATCGATTCGATTTC 124619 |||| || ||||| |||| ||| || || |||| || || || ||||| | Sbjct 343551 CAGGGGCTGAATTCTCCAAATCTGAGGCTCACACAGCCGACGGGATCTCCATCCGATTCC 343610 Query 124620 CCAGATGTACCAAGATACGAGACGATAA 124647 | | || ||| || || || ||||| Sbjct 343611 CTCGCTGCACCCGAATCCGTGATGATAA 343638 >seq6502 Length=3845251 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 ||||||||||| |||||||| |||||||| || | || ||||| |||||| ||||| Sbjct 1107977 TCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCCGGCATCAGTCCTCGCTTCTTG 1108036 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||| | ||||| || || |||||||| || || || || | ||||| || Sbjct 1108037 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGGC 1108095 >seq4475 Length=11054148 Score = 93.3 bits (102), Expect = 4e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| ||||| ||||||||||| | || ||||| |||| |||| Sbjct 3068325 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGGCCAGGCATAAGACCTCTCTTCT 3068384 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 | | ||| ||||| |||||||| || || || ||||| || || || |||| ||||| | Sbjct 3068385 TCAGCCAAAATATAGCAGCAAAAGAGCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 3068444 Query 16344 C 16344 | Sbjct 3068445 C 3068445 Score = 84.2 bits (92), Expect = 2e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 15925 AACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAA 15984 ||| ||||| || ||||| || ||||| ||||||||||| || ||||||||||||||||| Sbjct 3059042 AACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAAGAAATGTTTTCCATAAAATCAAA 3059101 Query 15985 GGGATT 15990 |||||| Sbjct 3059102 GGGATT 3059107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511187747530600