Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq1473 187 2e-42 >seq1473 Length=14027634 Score = 187 bits (206), Expect = 2e-42 Identities = 386/573 (67%), Gaps = 6/573 (1%) Strand=Plus/Minus Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC 18848 || || || ||||| | ||| |||| |||||||| |||||||| || ||||| |||| Sbjct 9373008 GGAGATCTAGGCCCAGTATACCGCTTTCAGTGGAGGCATTTTGGGGCCGAATACGAAGAT 9372949 Query 18849 TGTCAATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATT 18908 | ||| | |||| | ||||| | || || ||||| | || | || ||||| Sbjct 9372948 ACGGATTCAGATTATTCAGGCAAAGGAGTAGACCAACTGCAGAAGGTGACTGACACAATC 9372889 Query 18909 AAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCC 18968 ||||| ||||| | | || |||| || || | | ||||||||||| | |||| Sbjct 9372888 AAAACCAACCCTAATGACAGAAGAATCATCATGTGTGCCTGGAATCCAAAACACCTCCCG 9372829 Query 18969 TTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTA 19028 | | || || || || || || | | || ||||| ||||| | |||||||| | Sbjct 9372828 CTCACGGCCCTCCCACCCTGCCATGCCCTTTGCCAGTTCTACGTGGTGAACGGTGAGCTG 9372769 Query 19029 TCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCT 19088 |||||||| | || || | || || || |||||||| || || || |||||||| || Sbjct 9372768 TCCTGCCAGCTGTATGAGCGGTCAGGAGACATGGGCCTGGGCGTGCCCTTCAACATCGCC 9372709 Query 19089 GGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTA 19148 | || | || || |||||||| | || || | ||||| || || | || || | Sbjct 9372708 AGCTACTCTCTGCTCACCTACATGATTGCACACATCACAGGCCTGAAGCCAGGTGACCTT 9372649 Query 19149 ATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTGCAG 19208 | || || |||| |||||||| |||||| ||||||| | || | | ||| ||||| Sbjct 9372648 GTACACACTTTGGGAGATGCACACATTTACCTGAATCACACTGAGCCACTGAAAATGCAG 9372589 Query 19209 CTAGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATGTAACAGATATA 19268 || | ||| |||| ||||| || || ||||| ||||||| || || | | Sbjct 9372588 CTTCCGCGAGAACCAAGGCCTTTCCCGAAGCTCAAAATGCTTCGAAAAGT---TGAGAAA 9372532 Query 19269 A---ACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAccccccccTA 19325 | | | ||| || || || |||||| |||| || || ||||| || || | | Sbjct 9372531 ACTGATGGCTTCAAGGCTGAAGACTTTCAGATTGAAGGCTACAATCCTCATCCGACTATT 9372472 Query 19326 AAAATGGAAATGGCTCTTTAATGGATTTTTAAA 19358 ||||||||||||||| ||||| | ||||||| Sbjct 9372471 AAAATGGAAATGGCTGTTTAAAGTGCTTTTAAA 9372439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399331371200475