Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq1275 360 1e-94 seq2156 286 2e-72 seq1473 217 1e-51 seq35454 161 7e-35 seq2315 125 5e-24 >seq1275 Length=2626219 Score = 360 bits (398), Expect = 1e-94 Identities = 431/581 (74%), Gaps = 6/581 (1%) Strand=Plus/Plus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || |||||| ||||| |||||||||||||||||||||||||| | ||| Sbjct 1847890 AAAACACTTTCACATTAATTGTTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTT 1847949 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074 | || || |||| ||| |||||| |||||||||| | |||||| ||||| || | | Sbjct 1847950 TTCTCCTGGACATCAGAGGGAACACCTGGATATTCTGGAAGAAGTTTATATTTTTCCAAA 1848009 Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCA--CAA-AC 4131 ||| |||| ||||||| || ||| ||||| || ||||||||||| ||| || | Sbjct 1848010 TCAGTTTCTAGAAAAAATATGCCACTCTCAAATTCCTGCATGATCCTTGTCCTGCAGGAT 1848069 Query 4132 AGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATC 4191 | | |||||| | ||| | ||| ||||| ||| ||| || |||||||| | |||| Sbjct 1848070 AATCTAAGATGACCTGGCTTGTCCATGGCTTCCTTAAACAGAG--CTACCTCCCACTATC 1848127 Query 4192 CAGACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCT 4251 || ||||| ||| ||| ||||| ||||||||| || || |||||||||| |||||||| Sbjct 1848128 CAAACCATATCTGCTTAATTTGTTAATTCTGGTTGCTCAATAAGTTTTAAGGCATCATCC 1848187 Query 4252 AAACTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACA 4311 | ||| || | ||||||||||||| |||||||| ||| | ||||| | || ||||| Sbjct 1848188 AGACTTTTGTCAAAAAAATGAGCTCC-TGTGGAAGTTCCCTGAGTTCTCTACTTAGAACT 1848246 Query 4312 ACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTA 4371 | | |||||||| | |||||||| | || |||||| || | |||||||| |||||| || Sbjct 1848247 AAACTAATTCTGTCCTTTAAAGGTCAGTCCTTCTCTTGAGTGGAGAACCAGGTCTTTCTA 1848306 Query 4372 CCCATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAA 4431 ||||||||||| ||| ||| ||| || | | |||| | || |||||||||||||| Sbjct 1848307 CCCATAATCACCAAACGCTGCTTACCTTCTGCTAAAGAGGCTGTGGTCATTCTTTGGAAG 1848366 Query 4432 TGTTTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATG 4491 | || || |||||| | | ||||| |||| || || | ||||| || ||||| Sbjct 1848367 TACTTGAATTCATTCCTGACCGGGGGCCAGGGCAGGTCCCCATTCTTGCCCATATCCATG 1848426 Query 4492 TTTTGAGCTACAGCAACAATGCAGTTTAGTGCTTGAACCAT 4532 || || | ||||| | ||||||| || | ||||||| Sbjct 1848427 TTCTGGGACACAGCGATGATGCAGTCGAGCGGACGAACCAT 1848467 >seq2156 Length=6750109 Score = 286 bits (316), Expect = 2e-72 Identities = 287/368 (78%), Gaps = 6/368 (2%) Strand=Plus/Minus Query 4155 CATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGC 4214 ||| ||||| ||||| |||||||| |||||| | |||| || ||||| ||||||| || Sbjct 6386668 CATGGCTTCCTTATAAACAGAACTGCCTCCACTG-TCCAAACTATGTCCACTTTATCTGT 6386610 Query 4215 TAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGC 4274 ||||||| | || | |||||||||||| |||||||| | ||| | || | ||||||||| Sbjct 6386609 TAATTCTAGTTGCTAGGTAAGTTTTAAGGCATCATCCAGACTTCTGGCAAGAAAATGAGC 6386550 Query 4275 TCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTG-CCTTTTAAAG 4333 || |||||| | ||||| | ||| | |||||||| | |||||||||| |||||||||| Sbjct 6386549 TCCTTGTGGAGGTTCCTTGAATTCTCTACTGAGAACTAAATTAATTCTGTCCTTTTAAAG 6386490 Query 4334 GCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTT 4393 | || |||||||| ||||| |||||||| |||||| |||| |||||||| |||||||||| Sbjct 6386489 GTCGATTCTTCTCTGGAATGGAGAACCAGGTCTTTCTACCAATAATCACCAAATTCTGTT 6386430 Query 4394 TATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTCATAAGTC 4453 || || ||| ||||| | || |||||||||| ||||| ||||| |||||| | ||| Sbjct 6386429 TACCTTCTACTGAAGAGGCTGTGGTCATTCTTTTGAAATACTTAAATTCATTCCTGAGTG 6386370 Query 4454 TTGGCCAAGGCAAGTTACCTTGT--TTGCCAATGCCCATGTTTTGAGCTACAGCAACAAT 4511 |||| ||| || || ||| ||||| || |||||||| || | | | ||| | Sbjct 6386369 GGTGCCAGTGCAGGT--CCCTGTTCTTGCCGATACCCATGTTCTGGGACATGGTGACAGT 6386312 Query 4512 GCAGTTTA 4519 |||||||| Sbjct 6386311 GCAGTTTA 6386304 >seq1473 Length=14027634 Score = 217 bits (240), Expect = 1e-51 Identities = 495/739 (67%), Gaps = 7/739 (1%) Strand=Plus/Plus Query 101533 TTAAACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATAT-AATGT 101591 |||||||||||| | ||||||||| | || || || || ||| ||| ||| | || || Sbjct 9372451 TTAAACAGCCATTTCCATTTTAATAGTCGGATGAGGATTGTAGCCTTC-AATCTGAAAGT 9372509 Query 101592 CATCTGCTTTAAAGTCATCAATGCATGAAACATTTCTAGCAAATCTAAGTGTTGGAAACG 101651 | || || || ||| ||||| | ||| |||| | | | | || | || || | Sbjct 9372510 CTTCAGCCTTGAAGCCATCAGTTTTCTCAACTTTTCGAAGCATTTTGAGCTTCGGGAAAG 9372569 Query 101652 GTCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAG 101711 | || || ||||| | ||||||||| || | ||| |||||| | || ||||| | Sbjct 9372570 GCCTTGGTTCTCGCGGAAGCTGCATTTTCAGTGGCTCAGTGTGATTCAGGTAAATGTGTG 9372629 Query 101712 CATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGC 101771 ||||||| | ||| || | || || || ||| || |||| || ||||||||| Sbjct 9372630 CATCTCCCAAAGTGTGTACAAGGTCACCTGGCTTCAGGCCTGTGATGTGTGCAATCATGT 9372689 Query 101772 AAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATC 101831 | || | ||||| ||||| || ||||| || ||||| || | ||||| || |||| | Sbjct 9372690 AGGTGAGCAGAGAGTAGCTGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCTCCTGACC 9372749 Query 101832 TTTGATACAGTTGACAGGAAAGCTTTCCAT-CACAGACATAAAATTGACTTAATACATGA 101890 | |||||| || ||||| |||| || | ||| || || || || | | |||| Sbjct 9372750 GCTCATACAGCTGGCAGGACAGCTCACCGTTCACC-ACGTAGAACTGGCAAAGGGCATGG 9372808 Query 101891 CAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCTT 101950 || || || | || | || | || | |||||| |||||||| | || ||| Sbjct 9372809 CAGGGTGGGAGGGCCGTGAGCGGGAGGTGTTTTGGATTCCAGGCACACATGATGATTCTT 9372868 Query 101951 CTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACTCCTTCT 102010 || || ||||||| ||||| || || ||| ||| || | | |||||| ||||||| Sbjct 9372869 CTGTCATTAGGGTTGGTTTTGATTGTGTCAGTCACCTTCTGCAGTTGGTCTACTCCTTTG 9372928 Query 102011 CCTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCA 102070 ||| |||||| | | ||| ||||| || || ||||||||||||||||| | Sbjct 9372929 CCTGAATAATCTGAATCCGTATCTTCGTATTCGGCCCCAAAATGCCTCCACTGAAAGCGG 9372988 Query 102071 TACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGAT 102130 || || || || ||||||||||| |||| | || || || | || || | | Sbjct 9372989 TATACTGGGCCTAGATCTCCTTC---TCTGGTGGAGAATCCCAGGCTGTCCAAGACGCCT 9373045 Query 102131 CTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTA 102190 | || ||| | || ||||| || | ||| || | || ||||| || || || Sbjct 9373046 CGGGACCCACTGGCGTCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTG 9373105 Query 102191 GATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTA 102250 ||||| |||||||||||| || ||| || | |||||| |||| || || | || || Sbjct 9373106 GATCCCTTGATAAACCACAGCAATTCCTCCAAAACACCCTTCCAGAAAACACGTTTGGTT 9373165 Query 102251 GTTAAAAGTGGAAATTCAT 102269 || | ||||||||||||| Sbjct 9373166 GTGAGCAGTGGAAATTCAT 9373184 >seq35454 Length=14371021 Score = 161 bits (178), Expect = 7e-35 Identities = 181/242 (75%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 26931 AGCTTTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGC 26990 |||| ||| | |||| | | |||||||| || ||||| |||||||| || | ||| ||| Sbjct 9218536 AGCTCTTAAGCCACATGGCGTACAATGGGGGTGACGCAGGTGCAGCCCACGGCCACCAGC 9218477 Query 26991 ATCTTCTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATC 27050 |||||||| |||| || || | |||||| | ||| || | |||| || || ||| Sbjct 9218476 ATCTTCTCCAGCCGGAAGGAGTGTGGGCAGTGCTGAGGCTCCCGTCGCAGGACCAGGATC 9218417 Query 27051 TCTTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACAT 27110 ||||| ||||| ||||| ||||||||||||| ||| || ||||| | ||| || ||||| Sbjct 9218416 TCTTGCTGGATGGGGACGGAGTTCATGTGGTGGTCGACCTTCCCCTTAGCGTTGACACAG 9218357 Query 27111 CCTAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTG 27170 || ||| || ||||| || ||||| ||||||||||| || | || | || || ||| Sbjct 9218356 CCCGAGTGGCTGCACTTGGCCTCCCAGATCACAGAGGGGTACCGCTCGGGGTCCTCGTTG 9218297 Query 27171 CG 27172 || Sbjct 9218296 CG 9218295 >seq2315 Length=13333760 Score = 125 bits (138), Expect = 5e-24 Identities = 99/119 (83%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||||||| ||||| | |||||| |||||||| |||||||||| ||||||||| Sbjct 1940796 TTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCCACTTTATTTGTTAATTCTGGT 1940737 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGG 4283 || || |||||||||| |||||||| | ||| || || | ||||||||||| ||||| Sbjct 1940736 TGCTCAATAAGTTTTAAGGCATCATCCAGACTGTTGGCAAGAAAATGAGCTCCTTGTGG 1940678 Score = 120 bits (132), Expect = 2e-22 Identities = 92/109 (84%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | |||||||||| | |||||||| || |||||||| || Sbjct 1935679 CTTGAGTTCTCTACTGAGAACCAAATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGG 1935620 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| |||||| ||||||||||||| ||||| |||||| || Sbjct 1935619 AATGGAGAACCAGGTCTTTCTACCCATAATCACCAAATTTTGTTTACCT 1935571 Score = 98.7 bits (108), Expect = 7e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| ||||| || | ||||| |||||||||||| |||||| ||||| || ||||| Sbjct 1943055 AAGTTTATATTTTTCCAAATCAATTTCTGGAAAAAACATGTCACTCTCAAACTCCTGCAT 1942996 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGA 4175 |||||| |||||||| | | |||||| || ||| | ||||||||| || | | ||| Sbjct 1942995 GATCCTTGTCACAAATAATCTAAGATGGCCTGGCTTGTCCATAGCTTCCTTTGAAATAGA 1942936 Query 4176 AC 4177 || Sbjct 1942935 AC 1942934 Score = 95.1 bits (104), Expect = 9e-15 Identities = 77/93 (83%), Gaps = 3/93 (3%) Strand=Plus/Minus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| ||| || ||||| ||||| |||||||||||||||||||||||||| | |||| Sbjct 1950679 AAAAAACACTT---TTAATTGTTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTC 1950623 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATAT 4047 || || || |||| |||| |||||| ||||||| Sbjct 1950622 TCCTCCTGGACATCAGAAGGAACACCTGGATAT 1950590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361095100534205