Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23]
35,455 sequences; 1,992,663,268 total letters
Query= NC_001350.1
Length=112930
Score E
Sequences producing significant alignments: (Bits) Value
seq1275 360 1e-94
seq2156 286 2e-72
seq1473 217 1e-51
seq35454 161 7e-35
seq2315 125 5e-24
>seq1275
Length=2626219
Score = 360 bits (398), Expect = 1e-94
Identities = 431/581 (74%), Gaps = 6/581 (1%)
Strand=Plus/Plus
Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014
|||| || || |||||| ||||| |||||||||||||||||||||||||| | |||
Sbjct 1847890 AAAACACTTTCACATTAATTGTTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTT 1847949
Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGA 4074
| || || |||| ||| |||||| |||||||||| | |||||| ||||| || | |
Sbjct 1847950 TTCTCCTGGACATCAGAGGGAACACCTGGATATTCTGGAAGAAGTTTATATTTTTCCAAA 1848009
Query 4075 TCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCA--CAA-AC 4131
||| |||| ||||||| || ||| ||||| || ||||||||||| ||| || |
Sbjct 1848010 TCAGTTTCTAGAAAAAATATGCCACTCTCAAATTCCTGCATGATCCTTGTCCTGCAGGAT 1848069
Query 4132 AGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATC 4191
| | |||||| | ||| | ||| ||||| ||| ||| || |||||||| | ||||
Sbjct 1848070 AATCTAAGATGACCTGGCTTGTCCATGGCTTCCTTAAACAGAG--CTACCTCCCACTATC 1848127
Query 4192 CAGACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCT 4251
|| ||||| ||| ||| ||||| ||||||||| || || |||||||||| ||||||||
Sbjct 1848128 CAAACCATATCTGCTTAATTTGTTAATTCTGGTTGCTCAATAAGTTTTAAGGCATCATCC 1848187
Query 4252 AAACTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACA 4311
| ||| || | ||||||||||||| |||||||| ||| | ||||| | || |||||
Sbjct 1848188 AGACTTTTGTCAAAAAAATGAGCTCC-TGTGGAAGTTCCCTGAGTTCTCTACTTAGAACT 1848246
Query 4312 ACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTA 4371
| | |||||||| | |||||||| | || |||||| || | |||||||| |||||| ||
Sbjct 1848247 AAACTAATTCTGTCCTTTAAAGGTCAGTCCTTCTCTTGAGTGGAGAACCAGGTCTTTCTA 1848306
Query 4372 CCCATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAA 4431
||||||||||| ||| ||| ||| || | | |||| | || ||||||||||||||
Sbjct 1848307 CCCATAATCACCAAACGCTGCTTACCTTCTGCTAAAGAGGCTGTGGTCATTCTTTGGAAG 1848366
Query 4432 TGTTTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATG 4491
| || || |||||| | | ||||| |||| || || | ||||| || |||||
Sbjct 1848367 TACTTGAATTCATTCCTGACCGGGGGCCAGGGCAGGTCCCCATTCTTGCCCATATCCATG 1848426
Query 4492 TTTTGAGCTACAGCAACAATGCAGTTTAGTGCTTGAACCAT 4532
|| || | ||||| | ||||||| || | |||||||
Sbjct 1848427 TTCTGGGACACAGCGATGATGCAGTCGAGCGGACGAACCAT 1848467
>seq2156
Length=6750109
Score = 286 bits (316), Expect = 2e-72
Identities = 287/368 (78%), Gaps = 6/368 (2%)
Strand=Plus/Minus
Query 4155 CATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGC 4214
||| ||||| ||||| |||||||| |||||| | |||| || ||||| ||||||| ||
Sbjct 6386668 CATGGCTTCCTTATAAACAGAACTGCCTCCACTG-TCCAAACTATGTCCACTTTATCTGT 6386610
Query 4215 TAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGC 4274
||||||| | || | |||||||||||| |||||||| | ||| | || | |||||||||
Sbjct 6386609 TAATTCTAGTTGCTAGGTAAGTTTTAAGGCATCATCCAGACTTCTGGCAAGAAAATGAGC 6386550
Query 4275 TCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTG-CCTTTTAAAG 4333
|| |||||| | ||||| | ||| | |||||||| | |||||||||| ||||||||||
Sbjct 6386549 TCCTTGTGGAGGTTCCTTGAATTCTCTACTGAGAACTAAATTAATTCTGTCCTTTTAAAG 6386490
Query 4334 GCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTT 4393
| || |||||||| ||||| |||||||| |||||| |||| |||||||| ||||||||||
Sbjct 6386489 GTCGATTCTTCTCTGGAATGGAGAACCAGGTCTTTCTACCAATAATCACCAAATTCTGTT 6386430
Query 4394 TATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTCATAAGTC 4453
|| || ||| ||||| | || |||||||||| ||||| ||||| |||||| | |||
Sbjct 6386429 TACCTTCTACTGAAGAGGCTGTGGTCATTCTTTTGAAATACTTAAATTCATTCCTGAGTG 6386370
Query 4454 TTGGCCAAGGCAAGTTACCTTGT--TTGCCAATGCCCATGTTTTGAGCTACAGCAACAAT 4511
|||| ||| || || ||| ||||| || |||||||| || | | | ||| |
Sbjct 6386369 GGTGCCAGTGCAGGT--CCCTGTTCTTGCCGATACCCATGTTCTGGGACATGGTGACAGT 6386312
Query 4512 GCAGTTTA 4519
||||||||
Sbjct 6386311 GCAGTTTA 6386304
>seq1473
Length=14027634
Score = 217 bits (240), Expect = 1e-51
Identities = 495/739 (67%), Gaps = 7/739 (1%)
Strand=Plus/Plus
Query 101533 TTAAACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATAT-AATGT 101591
|||||||||||| | ||||||||| | || || || || ||| ||| ||| | || ||
Sbjct 9372451 TTAAACAGCCATTTCCATTTTAATAGTCGGATGAGGATTGTAGCCTTC-AATCTGAAAGT 9372509
Query 101592 CATCTGCTTTAAAGTCATCAATGCATGAAACATTTCTAGCAAATCTAAGTGTTGGAAACG 101651
| || || || ||| ||||| | ||| |||| | | | | || | || || |
Sbjct 9372510 CTTCAGCCTTGAAGCCATCAGTTTTCTCAACTTTTCGAAGCATTTTGAGCTTCGGGAAAG 9372569
Query 101652 GTCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAG 101711
| || || ||||| | ||||||||| || | ||| |||||| | || ||||| |
Sbjct 9372570 GCCTTGGTTCTCGCGGAAGCTGCATTTTCAGTGGCTCAGTGTGATTCAGGTAAATGTGTG 9372629
Query 101712 CATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGC 101771
||||||| | ||| || | || || || ||| || |||| || |||||||||
Sbjct 9372630 CATCTCCCAAAGTGTGTACAAGGTCACCTGGCTTCAGGCCTGTGATGTGTGCAATCATGT 9372689
Query 101772 AAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATC 101831
| || | ||||| ||||| || ||||| || ||||| || | ||||| || |||| |
Sbjct 9372690 AGGTGAGCAGAGAGTAGCTGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCTCCTGACC 9372749
Query 101832 TTTGATACAGTTGACAGGAAAGCTTTCCAT-CACAGACATAAAATTGACTTAATACATGA 101890
| |||||| || ||||| |||| || | ||| || || || || | | ||||
Sbjct 9372750 GCTCATACAGCTGGCAGGACAGCTCACCGTTCACC-ACGTAGAACTGGCAAAGGGCATGG 9372808
Query 101891 CAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCTT 101950
|| || || | || | || | || | |||||| |||||||| | || |||
Sbjct 9372809 CAGGGTGGGAGGGCCGTGAGCGGGAGGTGTTTTGGATTCCAGGCACACATGATGATTCTT 9372868
Query 101951 CTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACTCCTTCT 102010
|| || ||||||| ||||| || || ||| ||| || | | |||||| |||||||
Sbjct 9372869 CTGTCATTAGGGTTGGTTTTGATTGTGTCAGTCACCTTCTGCAGTTGGTCTACTCCTTTG 9372928
Query 102011 CCTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCA 102070
||| |||||| | | ||| ||||| || || ||||||||||||||||| |
Sbjct 9372929 CCTGAATAATCTGAATCCGTATCTTCGTATTCGGCCCCAAAATGCCTCCACTGAAAGCGG 9372988
Query 102071 TACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGAT 102130
|| || || || ||||||||||| |||| | || || || | || || | |
Sbjct 9372989 TATACTGGGCCTAGATCTCCTTC---TCTGGTGGAGAATCCCAGGCTGTCCAAGACGCCT 9373045
Query 102131 CTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTA 102190
| || ||| | || ||||| || | ||| || | || ||||| || || ||
Sbjct 9373046 CGGGACCCACTGGCGTCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTG 9373105
Query 102191 GATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTA 102250
||||| |||||||||||| || ||| || | |||||| |||| || || | || ||
Sbjct 9373106 GATCCCTTGATAAACCACAGCAATTCCTCCAAAACACCCTTCCAGAAAACACGTTTGGTT 9373165
Query 102251 GTTAAAAGTGGAAATTCAT 102269
|| | |||||||||||||
Sbjct 9373166 GTGAGCAGTGGAAATTCAT 9373184
>seq35454
Length=14371021
Score = 161 bits (178), Expect = 7e-35
Identities = 181/242 (75%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 26931 AGCTTTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGC 26990
|||| ||| | |||| | | |||||||| || ||||| |||||||| || | ||| |||
Sbjct 9218536 AGCTCTTAAGCCACATGGCGTACAATGGGGGTGACGCAGGTGCAGCCCACGGCCACCAGC 9218477
Query 26991 ATCTTCTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATC 27050
|||||||| |||| || || | |||||| | ||| || | |||| || || |||
Sbjct 9218476 ATCTTCTCCAGCCGGAAGGAGTGTGGGCAGTGCTGAGGCTCCCGTCGCAGGACCAGGATC 9218417
Query 27051 TCTTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACAT 27110
||||| ||||| ||||| ||||||||||||| ||| || ||||| | ||| || |||||
Sbjct 9218416 TCTTGCTGGATGGGGACGGAGTTCATGTGGTGGTCGACCTTCCCCTTAGCGTTGACACAG 9218357
Query 27111 CCTAAGTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTG 27170
|| ||| || ||||| || ||||| ||||||||||| || | || | || || |||
Sbjct 9218356 CCCGAGTGGCTGCACTTGGCCTCCCAGATCACAGAGGGGTACCGCTCGGGGTCCTCGTTG 9218297
Query 27171 CG 27172
||
Sbjct 9218296 CG 9218295
>seq2315
Length=13333760
Score = 125 bits (138), Expect = 5e-24
Identities = 99/119 (83%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224
||||| |||||||| ||||| | |||||| |||||||| |||||||||| |||||||||
Sbjct 1940796 TTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCCACTTTATTTGTTAATTCTGGT 1940737
Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGG 4283
|| || |||||||||| |||||||| | ||| || || | ||||||||||| |||||
Sbjct 1940736 TGCTCAATAAGTTTTAAGGCATCATCCAGACTGTTGGCAAGAAAATGAGCTCCTTGTGG 1940678
Score = 120 bits (132), Expect = 2e-22
Identities = 92/109 (84%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349
||| ||||| | |||||||| | |||||||||| | |||||||| || |||||||| ||
Sbjct 1935679 CTTGAGTTCTCTACTGAGAACCAAATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGG 1935620
Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398
||| |||||||| |||||| ||||||||||||| ||||| |||||| ||
Sbjct 1935619 AATGGAGAACCAGGTCTTTCTACCCATAATCACCAAATTTTGTTTACCT 1935571
Score = 98.7 bits (108), Expect = 7e-16
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115
|||||| ||||| || | ||||| |||||||||||| |||||| ||||| || |||||
Sbjct 1943055 AAGTTTATATTTTTCCAAATCAATTTCTGGAAAAAACATGTCACTCTCAAACTCCTGCAT 1942996
Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGA 4175
|||||| |||||||| | | |||||| || ||| | ||||||||| || | | |||
Sbjct 1942995 GATCCTTGTCACAAATAATCTAAGATGGCCTGGCTTGTCCATAGCTTCCTTTGAAATAGA 1942936
Query 4176 AC 4177
||
Sbjct 1942935 AC 1942934
Score = 95.1 bits (104), Expect = 9e-15
Identities = 77/93 (83%), Gaps = 3/93 (3%)
Strand=Plus/Minus
Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014
|||| ||| || ||||| ||||| |||||||||||||||||||||||||| | ||||
Sbjct 1950679 AAAAAACACTT---TTAATTGTTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTC 1950623
Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATAT 4047
|| || || |||| |||| |||||| |||||||
Sbjct 1950622 TCCTCCTGGACATCAGAAGGAACACCTGGATAT 1950590
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 361095100534205
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