Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23]
35,455 sequences; 1,992,663,268 total letters
Query= NC_001731.1
Length=190289
Score E
Sequences producing significant alignments: (Bits) Value
seq1271 329 4e-85
seq7691 260 2e-64
seq2669 205 1e-47
seq8498 170 2e-37
seq6811 140 4e-28
seq6109 125 9e-24
seq5950 82.4 9e-11
>seq1271
Length=7240109
Score = 329 bits (364), Expect = 4e-85
Identities = 359/473 (76%), Gaps = 9/473 (2%)
Strand=Plus/Plus
Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116
||||||| |||||||| ||||||| | | |||||| | |||||||||| |||||||||
Sbjct 1727362 AGCAGGGTTTCGATGTCAGGCTCCATGTCGAGGGTCAGAAAGCGGTGGCTATACCTGCGC 1727421
Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAG-AACTTCTCGAAGTTCCAGGCCACGTCGTTGCG 83175
|| |||| || || | ||| || | ||||||||||||||||||| || ||||||||
Sbjct 1727422 ACAGGCGCACCATCTGGGCCCCCCCGGGAACTTCTCGAAGTTCCAGGAGACATCGTTGCG 1727481
Query 83176 GCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCT 83235
||| ||||||||||||| |||| || ||||||| ||| ||| | | || ||| ||
Sbjct 1727482 GCATACTGGAGACCAGGTGATGAACTTGGGGTCGGTCATGAGGGCAGTGGCGTGGTCCCT 1727541
Query 83236 AGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGAC 83295
|| | ||||||||||| || || |||||||||||||| || ||| ||| |||| ||
Sbjct 1727542 GGGAGTGGGCAGGGCCTCACGAAGAAAGGCGAAGAGCGGGTGCGCCTTTGAGCCGTCCAC 1727601
Query 83296 CTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAA---GCCGTTCCCAGGACGGACGTG 83352
|||||| ||||| ||||||| ||||| |||||||| ||||| | || ||||| |
Sbjct 1727602 CTCGCATTTCTCAAAGAGCACGAAGTTGGGCTCGAACCTGCCGT---CTGGTCGGACATA 1727658
Query 83353 CTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACA 83412
||| ||| | | |||||| | |||| | ||| ||||| | || ||||||| ||
Sbjct 1727659 CTTGAGGCAGTTTAGGATCTCCTCGTTCTTCGAGTTCTCCTGATACCCAGACTGGTTGCA 1727718
Query 83413 CGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTG 83472
| || | || ||||| ||||| ||||| | || |||||||||||||||| ||||||||
Sbjct 1727719 CAGGGAGCCCAGCACGACCAGGCCCCGGGGCCCGAGGCGCCGCTGCAGCTTATTCATCTG 1727778
Query 83473 AGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCA 83525
||||| |||||| |||| | |||| || ||||| |||||||| || |||
Sbjct 1727779 GGTGTAGTCCCGGCCCGTTGTGCCTC--AGTGACGCCACGTTCTCAGTGCGCA 1727829
>seq7691
Length=3662283
Score = 260 bits (288), Expect = 2e-64
Identities = 260/337 (77%), Gaps = 0/337 (0%)
Strand=Plus/Minus
Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116
|||||||| |||||||| ||||| | | | | |||| | ||||| ||||||||||||||
Sbjct 2867954 AGCAGGGCTTCGATGTCAGGCTCGATGTCGATGGTCAGAAAGCGGCGGCTGTACCTGCGC 2867895
Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176
|| ||| || || | ||||||| |||||||||||||||||||| ||||||||||||
Sbjct 2867894 ACAGGCACACCATCTGGGCCCACCAGGAACTTCTCGAAGTTCCAGGAGACGTCGTTGCGG 2867835
Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236
|| ||||||||||||| |||| || ||||||| ||| ||| | | |||||| ||
Sbjct 2867834 CATACTGGAGACCAGGTGATGAACTTGGGGTCGGTCATGAGGGCAGTGGCGTCGTCACTG 2867775
Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296
|| | ||||||||||| || || |||||||||||||| || ||| ||| ||||| ||
Sbjct 2867774 GGAGTGGGCAGGGCCTCACGAAGAAAGGCGAAGAGCGGGTGCGCCTTTGAGCCGTTCACG 2867715
Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356
|| || ||||| |||||||| ||||| |||||||| || || || ||||| | |||
Sbjct 2867714 TCACATTTCTCAAAGAGCATGAAGTTGGGCTCGAACCCACCTCCTGGTCGGACATACTTG 2867655
Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393
||| | || |||||| | |||| ||||| ||||
Sbjct 2867654 AGGCAGTTCAGGATCTCCTCGTTCTTCGCGTTCTCCT 2867618
Score = 145 bits (160), Expect = 9e-30
Identities = 139/178 (78%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450
|||| | || |||||||| || ||||| || ||||| ||||| ||||| | || ||||
Sbjct 2867341 CCTGATACCCAAACTGGTTGCATGGGAAGCCCAGCACGACCAGGCCCCGGGGCCCGAGGC 2867282
Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510
||||||||||||| |||| ||| ||||| ||||||||||| | |||||||| ||||| |
Sbjct 2867281 GCCGCTGCAGCTCATTCAGCTGGGTGTAGTCCCGGACCGTTGTGCCTCAGAGCGACGCCA 2867222
Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCC 83568
| ||||| ||||||| ||| |||||| | | ||| | |||||| || || || ||
Sbjct 2867221 CATTCTCAATGAGCAGCACCTTGCCCCGCAGGGAGCTCAGGCTCACCGGCTCCCCGCC 2867164
>seq2669
Length=6508339
Score = 205 bits (226), Expect = 1e-47
Identities = 323/461 (70%), Gaps = 20/461 (4%)
Strand=Plus/Plus
Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116
|||||||| |||||||| ||||| | | | | |||| | ||||| |||||| |||||||
Sbjct 5054428 AGCAGGGCTTCGATGTCAGGCTCGATGTCAATGGTCAGAAAGCGGCGGCTGTGCCTGCGC 5054487
Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176
|| ||| || || | ||||||| |||| || ||||||||| ||
Sbjct 5054488 ACAGGCACACCATCCGGGCCCACCAGGAACGTC---------------ACGTCGTTGTGG 5054532
Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236
|||||||||||||||| |||| || ||||||| ||| || | | |||||| ||
Sbjct 5054533 CACACTGGAGACCAGGTGATGAACTTGGGGTCGGTCATGAAGGCAGTGGCGTCGTCACTG 5054592
Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296
|||| | || ||||| || || |||||||||||| | || | ||| | | ||| ||
Sbjct 5054593 GGCG--TGAAGAGCCTCGCGAAGAAAGGCGAAGAGCAGGTGCG-CCTCGTGCTGTTCACA 5054649
Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356
||| | ||||| |||||||| ||| | |||||||| | | || || |||| || |||
Sbjct 5054650 TCGTATTTCTCAAAGAGCATGAAGCTGGGCTCGAACCTGCCGCCTGGTCGGATGTACTTG 5054709
Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGG 83416
||| | | || ||| | |||| |||||| ||| | || || |||||| | ||| ||
Sbjct 5054710 AGGCAGTTTAGGACCTCCTCGTTCTAGGCGTTCTCCCGCTGCCCAAACTGGCTGCACCGG 5054769
Query 83417 AACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTG 83476
|| || | | |||| | || || | |||||| ||||||||| | ||||| |||
Sbjct 5054770 AAGCCGA-ATCGGCCAGACACC-AGGCCGGAGGCGCTGCTGCAGCTGATCTATCTGGGTG 5054827
Query 83477 TACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTC 83517
| ||||||||| | || ||||| ||||| || |||||
Sbjct 5054828 CAGCCCCGGACCGCTGTGCCCCAGAGCGACGCCACATTCTC 5054868
>seq8498
Length=12118209
Score = 170 bits (188), Expect = 2e-37
Identities = 368/542 (68%), Gaps = 19/542 (4%)
Strand=Plus/Minus
Query 83063 GCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCACGGGC 83122
|| || | ||| |||| | | ||| |||| | ||| |||||||||||||| ||||
Sbjct 8525648 GCTTCCAGGTCAGGCTTAAGGTCCATGGTCAGAAAGCTTCAGCTGTACCTGCGCATGGGC 8525589
Query 83123 GTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACT 83182
|||||| || || |||||||||||||||||| || ||||| ||||||
Sbjct 8525588 ACGCCGTCCAGGCCTCCCGGGAACTTCTCGAAGTTCCAAGCGACGTCCTTGCGG------ 8525535
Query 83183 GGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCC 83242
| |||||| | || || ||| ||| ||| ||| || | | | || || ||||
Sbjct 8525534 --ATACCAGGAGACGAACTTGGGCTCGGTCATGAGGGTAGTGGCGACATCACTGGGCGTG 8525477
Query 83243 GGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCAC 83302
|||| ||||| || ||||||| |||||| || || ||| | | || || || ||||||
Sbjct 8525476 AGCAGAGCCTCGCGAAGGAAGGTGAAGAGTGGGTGCGCCTTGGTGCCATTCACGTCGCAC 8525417
Query 83303 TTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAA 83362
||||| |||||| | ||||| ||| |||| | | || | ||||| ||| | |
Sbjct 8525416 TTCTCAAAGAGCTTGAAGTTGGGCACGAACCTGCCATCA-GTGGGACGGACTTGAAGCCC 8525358
Query 83363 GGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGGAACCCA 83422
| |||||| |||| |||||| ||||| || | |||||||| ||| ||| ||
Sbjct 8525357 TTCGGGATCTCCTTGTTCTTGGCGTTCTCCTGATGCACAAACTGGTTGCACCAGAAGCCG 8525298
Query 83423 AGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCC 83482
|||| | ||| ||| || || || |||||||||||||| | ||| ||||| | |
Sbjct 8525297 AGCATGAACAGGGCCC-AG-GCCGAGTCGCCGCTGCAGCTCAT---TCTAGGTGTAGT-C 8525244
Query 83483 CGGACCGTGCTACCTCAGAG-GGACGCTACGTTCTCGATGAGCAAGACCCGGCCCCGTAA 83541
|||||||| | |||| | | || || | |||||| ||| || || | ||| |
Sbjct 8525243 CGGACCGTTGTGCCTCGGCGACGAGGCCAGGTTCTCTATGGGCGGCCCCTTTCACCGCAG 8525184
Query 83542 GAAGCCTAAGCTCACAGGTTCTCCT--CCGGTAATCGGGCGTGCTGAGAAGGCGTACACA 83599
|||||| | |||| | || | || || | || || || ||||||||||||||
Sbjct 8525183 GAAGCCCAGGCTC-CTGGGCCCGCTGGCCAGCGCGCGCACGCGCACAGAAGGCGTACACA 8525125
Query 83600 GA 83601
||
Sbjct 8525124 GA 8525123
>seq6811
Length=46538883
Score = 140 bits (154), Expect = 4e-28
Identities = 210/288 (73%), Gaps = 9/288 (3%)
Strand=Plus/Minus
Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468
||| ||||||| || |||| | ||| || ||| ||| ||||||||| || |||
Sbjct 3997603 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCACGCCTGC 3997545
Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528
||||| || |||| || |||||||| || |||||||||| || ||| | |||||||
Sbjct 3997544 TCGTGCACCTGTTCCCCGAGCTCTTCACCCACGAGAACCTGCGCAAGCAATACAACTGCA 3997485
Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587
||||||| |||||||| |||| || |||||| ||| | | |||| |||||
Sbjct 3997484 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCGTCCCGCATCAAGCTCATCCGCCACTAC 3997426
Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAA-AGTTCCTGGC 50646
|||||| ||||| |||| ||| ||||| ||||| |||| ||| ||||| |||
Sbjct 3997425 GTGCAGCTGCTGTACCCCCGGGCCAAAAACGACCGCGTCTGGA-CACTCGAGTTCGTGGG 3997367
Query 50647 GTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693
||||||||||||||||||||||| | |||||| || ||||||
Sbjct 3997366 CAAACTGGACGAGCGCTGCCGGCGCCG--GGACACGGAGCAGAGGCGC 3997321
>seq6109
Length=11704511
Score = 125 bits (138), Expect = 9e-24
Identities = 179/249 (72%), Gaps = 5/249 (2%)
Strand=Plus/Plus
Query 83051 GGGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTAC 83110
|||| |||||||| || ||||| |||||| | ||| |||| | ||| ||||||||||
Sbjct 1416651 GGGGACAGCAGGGCATCAATGTCCAGCTCCATGTCCATGGTCAGAAAGCAGTGGCTGTAC 1416710
Query 83111 CTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCG 83170
||| |||| ||| | ||| | |||||| ||||||||| ||||||||||||| ||
Sbjct 1416711 CTGTGCACAGGCACACTGTCCGGGCCCACCGGGAACTTCTCAAAGTTCCAGGCCATATCA 1416770
Query 83171 TTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCG--TGCTCATGT 83228
||| ||||| ||||||| | | || || | ||| | ||| ||||| | || |
Sbjct 1416771 CTGCAGCACAGCAGAGACCAAGTGAAGAACTTGTGGTAG-TCAAGAGCGCAGGGGCA--T 1416827
Query 83229 CGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCAC 83288
||| || ||||| ||||| |||| | | |||| || |||||| |||||| |||
Sbjct 1416828 TGTCCCTCGGCGCTGGCAGAGCCTGGGGAAAGAAGAGGACGAGCGGGTGTGCCTGTGCCT 1416887
Query 83289 CGTTGACCT 83297
| || ||||
Sbjct 1416888 CATTCACCT 1416896
>seq5950
Length=15534165
Score = 82.4 bits (90), Expect = 9e-11
Identities = 109/151 (72%), Gaps = 3/151 (2%)
Strand=Plus/Plus
Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450
|||| || || || ||||| || ||||| ||||| || ||||| | || || | ||
Sbjct 9527069 CCTGATGTCCAAATTGGTTGCAAGGGAAGCCAAGAACCACCAGGCGCCTAGGA---AAGC 9527125
Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510
| | ||||||||||| | ||| ||||| |||||| || | |||||||| || || |
Sbjct 9527126 GGCATTGCAGCTCGTTGAGCTGGGTGTAGTCCCGGGTGGTTGTGCCTCAGAGTGAGGCCA 9527185
Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAA 83541
| |||||||| |||| ||| ||| || ||
Sbjct 9527186 CATTCTCGATCAGCACTGCCCTGCCTCGGAA 9527216
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 608526988868200
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