Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq1271 329 4e-85 seq7691 260 2e-64 seq2669 205 1e-47 seq8498 170 2e-37 seq6811 140 4e-28 seq6109 125 9e-24 seq5950 82.4 9e-11 >seq1271 Length=7240109 Score = 329 bits (364), Expect = 4e-85 Identities = 359/473 (76%), Gaps = 9/473 (2%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 ||||||| |||||||| ||||||| | | |||||| | |||||||||| ||||||||| Sbjct 1727362 AGCAGGGTTTCGATGTCAGGCTCCATGTCGAGGGTCAGAAAGCGGTGGCTATACCTGCGC 1727421 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAG-AACTTCTCGAAGTTCCAGGCCACGTCGTTGCG 83175 || |||| || || | ||| || | ||||||||||||||||||| || |||||||| Sbjct 1727422 ACAGGCGCACCATCTGGGCCCCCCCGGGAACTTCTCGAAGTTCCAGGAGACATCGTTGCG 1727481 Query 83176 GCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCT 83235 ||| ||||||||||||| |||| || ||||||| ||| ||| | | || ||| || Sbjct 1727482 GCATACTGGAGACCAGGTGATGAACTTGGGGTCGGTCATGAGGGCAGTGGCGTGGTCCCT 1727541 Query 83236 AGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGAC 83295 || | ||||||||||| || || |||||||||||||| || ||| ||| |||| || Sbjct 1727542 GGGAGTGGGCAGGGCCTCACGAAGAAAGGCGAAGAGCGGGTGCGCCTTTGAGCCGTCCAC 1727601 Query 83296 CTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAA---GCCGTTCCCAGGACGGACGTG 83352 |||||| ||||| ||||||| ||||| |||||||| ||||| | || ||||| | Sbjct 1727602 CTCGCATTTCTCAAAGAGCACGAAGTTGGGCTCGAACCTGCCGT---CTGGTCGGACATA 1727658 Query 83353 CTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACA 83412 ||| ||| | | |||||| | |||| | ||| ||||| | || ||||||| || Sbjct 1727659 CTTGAGGCAGTTTAGGATCTCCTCGTTCTTCGAGTTCTCCTGATACCCAGACTGGTTGCA 1727718 Query 83413 CGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTG 83472 | || | || ||||| ||||| ||||| | || |||||||||||||||| |||||||| Sbjct 1727719 CAGGGAGCCCAGCACGACCAGGCCCCGGGGCCCGAGGCGCCGCTGCAGCTTATTCATCTG 1727778 Query 83473 AGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCA 83525 ||||| |||||| |||| | |||| || ||||| |||||||| || ||| Sbjct 1727779 GGTGTAGTCCCGGCCCGTTGTGCCTC--AGTGACGCCACGTTCTCAGTGCGCA 1727829 >seq7691 Length=3662283 Score = 260 bits (288), Expect = 2e-64 Identities = 260/337 (77%), Gaps = 0/337 (0%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | | | |||| | ||||| |||||||||||||| Sbjct 2867954 AGCAGGGCTTCGATGTCAGGCTCGATGTCGATGGTCAGAAAGCGGCGGCTGTACCTGCGC 2867895 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| || || | ||||||| |||||||||||||||||||| |||||||||||| Sbjct 2867894 ACAGGCACACCATCTGGGCCCACCAGGAACTTCTCGAAGTTCCAGGAGACGTCGTTGCGG 2867835 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 || ||||||||||||| |||| || ||||||| ||| ||| | | |||||| || Sbjct 2867834 CATACTGGAGACCAGGTGATGAACTTGGGGTCGGTCATGAGGGCAGTGGCGTCGTCACTG 2867775 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || | ||||||||||| || || |||||||||||||| || ||| ||| ||||| || Sbjct 2867774 GGAGTGGGCAGGGCCTCACGAAGAAAGGCGAAGAGCGGGTGCGCCTTTGAGCCGTTCACG 2867715 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 || || ||||| |||||||| ||||| |||||||| || || || ||||| | ||| Sbjct 2867714 TCACATTTCTCAAAGAGCATGAAGTTGGGCTCGAACCCACCTCCTGGTCGGACATACTTG 2867655 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 ||| | || |||||| | |||| ||||| |||| Sbjct 2867654 AGGCAGTTCAGGATCTCCTCGTTCTTCGCGTTCTCCT 2867618 Score = 145 bits (160), Expect = 9e-30 Identities = 139/178 (78%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| | || |||||||| || ||||| || ||||| ||||| ||||| | || |||| Sbjct 2867341 CCTGATACCCAAACTGGTTGCATGGGAAGCCCAGCACGACCAGGCCCCGGGGCCCGAGGC 2867282 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 ||||||||||||| |||| ||| ||||| ||||||||||| | |||||||| ||||| | Sbjct 2867281 GCCGCTGCAGCTCATTCAGCTGGGTGTAGTCCCGGACCGTTGTGCCTCAGAGCGACGCCA 2867222 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCC 83568 | ||||| ||||||| ||| |||||| | | ||| | |||||| || || || || Sbjct 2867221 CATTCTCAATGAGCAGCACCTTGCCCCGCAGGGAGCTCAGGCTCACCGGCTCCCCGCC 2867164 >seq2669 Length=6508339 Score = 205 bits (226), Expect = 1e-47 Identities = 323/461 (70%), Gaps = 20/461 (4%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | | | |||| | ||||| |||||| ||||||| Sbjct 5054428 AGCAGGGCTTCGATGTCAGGCTCGATGTCAATGGTCAGAAAGCGGCGGCTGTGCCTGCGC 5054487 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| || || | ||||||| |||| || ||||||||| || Sbjct 5054488 ACAGGCACACCATCCGGGCCCACCAGGAACGTC---------------ACGTCGTTGTGG 5054532 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 |||||||||||||||| |||| || ||||||| ||| || | | |||||| || Sbjct 5054533 CACACTGGAGACCAGGTGATGAACTTGGGGTCGGTCATGAAGGCAGTGGCGTCGTCACTG 5054592 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 |||| | || ||||| || || |||||||||||| | || | ||| | | ||| || Sbjct 5054593 GGCG--TGAAGAGCCTCGCGAAGAAAGGCGAAGAGCAGGTGCG-CCTCGTGCTGTTCACA 5054649 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 ||| | ||||| |||||||| ||| | |||||||| | | || || |||| || ||| Sbjct 5054650 TCGTATTTCTCAAAGAGCATGAAGCTGGGCTCGAACCTGCCGCCTGGTCGGATGTACTTG 5054709 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGG 83416 ||| | | || ||| | |||| |||||| ||| | || || |||||| | ||| || Sbjct 5054710 AGGCAGTTTAGGACCTCCTCGTTCTAGGCGTTCTCCCGCTGCCCAAACTGGCTGCACCGG 5054769 Query 83417 AACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTG 83476 || || | | |||| | || || | |||||| ||||||||| | ||||| ||| Sbjct 5054770 AAGCCGA-ATCGGCCAGACACC-AGGCCGGAGGCGCTGCTGCAGCTGATCTATCTGGGTG 5054827 Query 83477 TACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTC 83517 | ||||||||| | || ||||| ||||| || ||||| Sbjct 5054828 CAGCCCCGGACCGCTGTGCCCCAGAGCGACGCCACATTCTC 5054868 >seq8498 Length=12118209 Score = 170 bits (188), Expect = 2e-37 Identities = 368/542 (68%), Gaps = 19/542 (4%) Strand=Plus/Minus Query 83063 GCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCACGGGC 83122 || || | ||| |||| | | ||| |||| | ||| |||||||||||||| |||| Sbjct 8525648 GCTTCCAGGTCAGGCTTAAGGTCCATGGTCAGAAAGCTTCAGCTGTACCTGCGCATGGGC 8525589 Query 83123 GTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACT 83182 |||||| || || |||||||||||||||||| || ||||| |||||| Sbjct 8525588 ACGCCGTCCAGGCCTCCCGGGAACTTCTCGAAGTTCCAAGCGACGTCCTTGCGG------ 8525535 Query 83183 GGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCC 83242 | |||||| | || || ||| ||| ||| ||| || | | | || || |||| Sbjct 8525534 --ATACCAGGAGACGAACTTGGGCTCGGTCATGAGGGTAGTGGCGACATCACTGGGCGTG 8525477 Query 83243 GGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCAC 83302 |||| ||||| || ||||||| |||||| || || ||| | | || || || |||||| Sbjct 8525476 AGCAGAGCCTCGCGAAGGAAGGTGAAGAGTGGGTGCGCCTTGGTGCCATTCACGTCGCAC 8525417 Query 83303 TTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAA 83362 ||||| |||||| | ||||| ||| |||| | | || | ||||| ||| | | Sbjct 8525416 TTCTCAAAGAGCTTGAAGTTGGGCACGAACCTGCCATCA-GTGGGACGGACTTGAAGCCC 8525358 Query 83363 GGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGGAACCCA 83422 | |||||| |||| |||||| ||||| || | |||||||| ||| ||| || Sbjct 8525357 TTCGGGATCTCCTTGTTCTTGGCGTTCTCCTGATGCACAAACTGGTTGCACCAGAAGCCG 8525298 Query 83423 AGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCC 83482 |||| | ||| ||| || || || |||||||||||||| | ||| ||||| | | Sbjct 8525297 AGCATGAACAGGGCCC-AG-GCCGAGTCGCCGCTGCAGCTCAT---TCTAGGTGTAGT-C 8525244 Query 83483 CGGACCGTGCTACCTCAGAG-GGACGCTACGTTCTCGATGAGCAAGACCCGGCCCCGTAA 83541 |||||||| | |||| | | || || | |||||| ||| || || | ||| | Sbjct 8525243 CGGACCGTTGTGCCTCGGCGACGAGGCCAGGTTCTCTATGGGCGGCCCCTTTCACCGCAG 8525184 Query 83542 GAAGCCTAAGCTCACAGGTTCTCCT--CCGGTAATCGGGCGTGCTGAGAAGGCGTACACA 83599 |||||| | |||| | || | || || | || || || |||||||||||||| Sbjct 8525183 GAAGCCCAGGCTC-CTGGGCCCGCTGGCCAGCGCGCGCACGCGCACAGAAGGCGTACACA 8525125 Query 83600 GA 83601 || Sbjct 8525124 GA 8525123 >seq6811 Length=46538883 Score = 140 bits (154), Expect = 4e-28 Identities = 210/288 (73%), Gaps = 9/288 (3%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| ||||||||| || ||| Sbjct 3997603 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCACGCCTGC 3997545 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 ||||| || |||| || |||||||| || |||||||||| || ||| | ||||||| Sbjct 3997544 TCGTGCACCTGTTCCCCGAGCTCTTCACCCACGAGAACCTGCGCAAGCAATACAACTGCA 3997485 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || |||||| ||| | | |||| ||||| Sbjct 3997484 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCGTCCCGCATCAAGCTCATCCGCCACTAC 3997426 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAA-AGTTCCTGGC 50646 |||||| ||||| |||| ||| ||||| ||||| |||| ||| ||||| ||| Sbjct 3997425 GTGCAGCTGCTGTACCCCCGGGCCAAAAACGACCGCGTCTGGA-CACTCGAGTTCGTGGG 3997367 Query 50647 GTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 ||||||||||||||||||||||| | |||||| || |||||| Sbjct 3997366 CAAACTGGACGAGCGCTGCCGGCGCCG--GGACACGGAGCAGAGGCGC 3997321 >seq6109 Length=11704511 Score = 125 bits (138), Expect = 9e-24 Identities = 179/249 (72%), Gaps = 5/249 (2%) Strand=Plus/Plus Query 83051 GGGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTAC 83110 |||| |||||||| || ||||| |||||| | ||| |||| | ||| |||||||||| Sbjct 1416651 GGGGACAGCAGGGCATCAATGTCCAGCTCCATGTCCATGGTCAGAAAGCAGTGGCTGTAC 1416710 Query 83111 CTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCG 83170 ||| |||| ||| | ||| | |||||| ||||||||| ||||||||||||| || Sbjct 1416711 CTGTGCACAGGCACACTGTCCGGGCCCACCGGGAACTTCTCAAAGTTCCAGGCCATATCA 1416770 Query 83171 TTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCG--TGCTCATGT 83228 ||| ||||| ||||||| | | || || | ||| | ||| ||||| | || | Sbjct 1416771 CTGCAGCACAGCAGAGACCAAGTGAAGAACTTGTGGTAG-TCAAGAGCGCAGGGGCA--T 1416827 Query 83229 CGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCAC 83288 ||| || ||||| ||||| |||| | | |||| || |||||| |||||| ||| Sbjct 1416828 TGTCCCTCGGCGCTGGCAGAGCCTGGGGAAAGAAGAGGACGAGCGGGTGTGCCTGTGCCT 1416887 Query 83289 CGTTGACCT 83297 | || |||| Sbjct 1416888 CATTCACCT 1416896 >seq5950 Length=15534165 Score = 82.4 bits (90), Expect = 9e-11 Identities = 109/151 (72%), Gaps = 3/151 (2%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || || ||||| || ||||| ||||| || ||||| | || || | || Sbjct 9527069 CCTGATGTCCAAATTGGTTGCAAGGGAAGCCAAGAACCACCAGGCGCCTAGGA---AAGC 9527125 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 | | ||||||||||| | ||| ||||| |||||| || | |||||||| || || | Sbjct 9527126 GGCATTGCAGCTCGTTGAGCTGGGTGTAGTCCCGGGTGGTTGTGCCTCAGAGTGAGGCCA 9527185 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAA 83541 | |||||||| |||| ||| ||| || || Sbjct 9527186 CATTCTCGATCAGCACTGCCCTGCCTCGGAA 9527216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608526988868200