Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq8041 143 3e-29 seq459 136 4e-27 seq3552 104 2e-17 seq2669 102 8e-17 seq4088 87.8 2e-12 seq1683 86.0 6e-12 >seq8041 Length=9355897 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | ||||| || ||||||||| | || || || ||| Sbjct 8398741 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 8398682 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| |||||||||||| | ||||| Sbjct 8398681 GACACCATCGAGAACG-TCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCA 8398623 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| || || ||||||||||| || | ||||||||| |||||||| Sbjct 8398622 GCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 8398563 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| ||||| | || ||||||| ||||| || Sbjct 8398562 CATCCAGAAGGAATCCACTCTGCACTTGGTCCTGCGCTTAAGGGGAGG 8398515 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | ||||| || ||||||||| | || || || ||| Sbjct 8398969 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 8398910 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| |||||||||||| | ||||| Sbjct 8398909 GACACCATCGAGAACG-TCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCA 8398851 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| || || ||||||||||| || | ||||||||| |||||||| Sbjct 8398850 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 8398791 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| ||||| || || |||| | || || ||| Sbjct 8398790 CATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGTCTCAGAGGGGGC 8398742 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | ||||| || ||||||||| | || || || ||| Sbjct 8399197 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 8399138 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| |||||||||||| | ||||| Sbjct 8399137 GACACCATCGAGAACG-TCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCA 8399079 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| || || ||||||||||| || | ||||||||| |||||||| Sbjct 8399078 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 8399019 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||| ||| |||| ||||| || || |||| | || || ||| Sbjct 8399018 CATCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGTCTCAGAGGGGGC 8398970 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | ||||| || ||||||||| | || || || ||| Sbjct 8399425 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 8399366 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| |||||||||||| | ||||| Sbjct 8399365 GACACCATCGAGAACG-TCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCA 8399307 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| || || ||||||||||| || | ||||||||| |||||||| Sbjct 8399306 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 8399247 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||| ||| |||| ||||| || || |||| | || || ||| Sbjct 8399246 CATCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGTCTCAGAGGGGGC 8399198 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | ||||| || ||||||||| | || || || ||| Sbjct 8399653 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 8399594 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| |||||||||||| | ||||| Sbjct 8399593 GACACCATCGAGAACG-TCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCA 8399535 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| || || ||||||||||| || | ||||||||| |||||||| Sbjct 8399534 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 8399475 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||| ||| |||| ||||| || || |||| | || || ||| Sbjct 8399474 CATCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGTCTCAGAGGGGGC 8399426 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | ||||| || ||||||||| | || || || ||| Sbjct 8399881 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 8399822 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| |||||||||||| | ||||| Sbjct 8399821 GACACCATCGAGAACG-TCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCA 8399763 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| || || ||||||||||| || | ||||||||| |||||||| Sbjct 8399762 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 8399703 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||| ||| |||| ||||| || || |||| | || || ||| Sbjct 8399702 CATCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGTCTCAGAGGGGGC 8399654 >seq459 Length=3563100 Score = 136 bits (150), Expect = 4e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| || || | |||||||| ||||||||| | || || || || Sbjct 2213660 AAAATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCC 2213719 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | | |||| || || | || || ||||||||||| | ||| Sbjct 2213720 AGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCTCCTGAC 2213779 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | ||||||| ||| ||||| |||||||| || | ||||| || || ||| Sbjct 2213780 CAGCAGAGGCTCATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTAC 2213839 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||||| | || ||||| || || |||| ||||||| || Sbjct 2213840 AACATCCAGAAGGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGGGGTGG 2213889 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || || || | | | Sbjct 2213891 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCTAGC 2213950 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | || || || |||||||| | ||||| Sbjct 2213951 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGACCA 2214009 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | ||||||| ||| ||||| |||||||| || | ||||| || || ||||| Sbjct 2214010 GCAGAGGCTCATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 2214069 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| | || ||||| || || |||| ||||||| || Sbjct 2214070 CATCCAGAAGGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGGGGTGG 2214117 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || || || ||| Sbjct 2214119 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 2214178 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | || || ||||||||||| | |||||| Sbjct 2214179 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCTCCTGACCAG 2214238 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | ||||||| ||| ||||| |||||||| || | ||||| || || |||||| Sbjct 2214239 CAGAGGCTCATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 2214298 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| ||| | || ||||| || || | || ||||||| ||| Sbjct 2214299 ATCCAGAAAGAGTCGACCCTGCACCTGGTCCTCCGTCTGAGGGGTGGC 2214346 >seq3552 Length=199577 Score = 104 bits (114), Expect = 2e-17 Identities = 149/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| | || || || || || | |||||| ||||||||| | || || || ||| Sbjct 80965 ATGCAGGTCTTTGTGAAGACCCTGATGGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 80906 Query 40750 GACAGCG-TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || || | |||| | ||||| | ||||| ||||||||||| | ||||| Sbjct 80905 GACACCACTGAGAATG-TCAAAGCTAAAATCCAAGACAAGGAGGGCATCCCACCTGACCA 80847 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAAC-GACTACA 40867 ||| | || || | ||| ||||||||||||| || | ||||| | || | ||||||| Sbjct 80846 GCAGCATCTGATTTTTGCGAGCAAACAGCTGGAGGATGGTCGCACTC-CATCAGACTACA 80788 Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892 | || ||||| ||| |||| ||||| Sbjct 80787 ATATTCAGAAAGAGTCCACCCTGCA 80763 >seq2669 Length=6508339 Score = 102 bits (112), Expect = 8e-17 Identities = 153/214 (71%), Gaps = 5/214 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || |||||||| ||||||||| |||| || || ||| Sbjct 4561891 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 4561950 Query 40750 GACAGCG-TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || || | |||| | ||||| | ||||| ||||||||||| | || || Sbjct 4561951 GACACCACTGAGAATG-TCAAAGCTAAAATCCAGGACAAGGAGGGCATCCCACCTGATCA 4562009 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || || | | |||||||||||| || || | |||| || |||||||| Sbjct 4562010 GCAGCATCTGATTTTTGTGGGCAAACAGCTAGAGGATGGCTGCACTCTGTCAGACTACAA 4562069 Query 40869 CA---TCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 | | ||||||||| |||| ||||| ||||| Sbjct 4562070 TATTCTTCAGAAGGAGTCCACCCTGCACTTAGTG 4562103 >seq4088 Length=12000580 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 || || || || || || || || || ||||| || |||||| |||| || || |||| Sbjct 9606616 ATACAGATCTTTGTGAAGACCCTGACAGGCAAGACTATCACCCTCGAGGTTGAGTCCACT 9606557 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||| | | ||| ||||| ||||||||||| | |||||| Sbjct 9606556 GACACCAATAAGAATGTCAAAGCTACAATCTAAGACAAGGAGGGCATCCCACCTGACCAG 9606497 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || || | | |||| ||||||||||| || | || || || || ||| | Sbjct 9606496 CAGCATCTGATTTTCACGGGGAAACAGCTGGAGGATGGCCGTACTCTGTCAGATTACGAT 9606437 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 | ||||| ||| |||| ||||| |||| | || ||| | |||||| Sbjct 9606436 GTTCAGAAAGAGTCCACCTTGCATTCAGTGCTTCGTTTGGGAGGCGGC 9606389 >seq1683 Length=8760594 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/229 (70%), Gaps = 7/229 (3%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || |||||||| |||||||| ||| || || ||| Sbjct 1156124 ATGCAGATCTTTGTGAAGACCCTAACGGGCAAGGCCATCACCCTCGG-GTTGAGCCCAGT 1156066 Query 40750 GACAGCG-TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || || | |||| | |||| | ||||| ||||||||||| | ||||| Sbjct 1156065 GACACCACTGAGAATG-TCAAAGCTAAAACCCAAGACAAGGAGGGCATCCCGCCTGACCA 1156007 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || || | ||||||||||||||||| |||| | ||| || |||||| Sbjct 1156006 GCAGCATCTGATTTTTGCGGGCAAACAGCTGGAGGACGGGGACACTCTGTCACACTACAG 1155947 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||| ||||| || | ||||| | ||| | | |||| |||||| Sbjct 1155946 TATCC---AGGAGTCCGCCCTGCACTTGGTGCT-TGTCTGAGAGGCGGC 1155902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514990861290800