Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq1473 185 6e-42 >seq1473 Length=14027634 Score = 185 bits (204), Expect = 6e-42 Identities = 441/661 (67%), Gaps = 7/661 (1%) Strand=Plus/Plus Query 97009 GGGAAAGGCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAA 97068 ||||||||||| || ||||| ||||||| | | || | ||| ||||||||| ||| Sbjct 9372563 GGGAAAGGCCTTGGTTCTCGCGGAAGCTGCATTTTCAGTGGCTCAGTGTGATTCAGGTAA 9372622 Query 97069 ATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCG 97128 ||||| |||||||| |||||||| | || || || || | | |||| || || Sbjct 9372623 ATGTGTGCATCTCCCAAAGTGTGTACAAGGTCACCTGGCTTCAGGCCTGTGATGTGTGCA 9372682 Query 97129 ATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCA 97188 ||||| | || | ||||| ||||| || ||||| || ||||| || || ||||| || Sbjct 9372683 ATCATGTAGGTGAGCAGAGAGTAGCTGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCT 9372742 Query 97189 GCTGATCTTTGATATAACTGACAGGAAAGCTTTCCAT-CACACACATAAAACTGACTCAA 97247 |||| | | ||| | ||| ||||| |||| || | ||| ||| || ||||| | | Sbjct 9372743 CCTGACCGCTCATACAGCTGGCAGGACAGCTCACCGTTCAC-CACGTAGAACTGGCAAAG 9372801 Query 97248 TACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACATCAA 97307 |||| ||||| || | ||| | || | | | |||||| |||||||| | Sbjct 9372802 GGCATGGCAGGGTGGGAGGGCCGTGAGCGGGAGGTGTTTTGGATTCCAGGCACACATGAT 9372861 Query 97308 CATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGATCAAC 97367 |||||||| || | ||||| || | || || | | | | || || | ||| || || Sbjct 9372862 GATTCTTCTGTCATTAGGGTTGGTTTTGATTGTGTCAGTCACCTTCTGCAGTTGGTCTAC 9372921 Query 97368 GCCTTCTCCACCATAATTGTGCTTAAG-ACCTTGATATTCTGCTCCAAAATGCCTCCATT 97426 |||| || ||||| || | | | ||| ||||| || |||||||||||||| | Sbjct 9372922 TCCTTTGCCTGAATAATC-TGAATCCGTATCTTCGTATTCGGCCCCAAAATGCCTCCACT 9372980 Query 97427 GGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTATCTA 97486 | || | || || || || || ||||||||| || |||| || || | || | Sbjct 9372981 GAAAGCGGTATACTGGGCCTAGATCTCCTTCT---CTGGTGGAGAATCCCAGGCTGTCCA 9373037 Query 97487 AATAGGACCTAGATCCATTTGCATCCCAAATGTGCACACCAGATGCTGCAAGCTCTTTGC 97546 | | | || ||| | || ||||| || | ||| || | | ||||| || Sbjct 9373038 AGACGCCTCGGGACCCACTGGCGTCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAG 9373097 Query 97547 TGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCAAAATACTC 97606 || || ||||| |||||||||||| |||||| |||| |||||| |||| || || | Sbjct 9373098 CGTTTGTGGATCCCTTGATAAACCACAGCAATTCCTCCAAAACACCCTTCCAGAAAACAC 9373157 Query 97607 TCTTAGTTGTTAAGAGAGGAAAATCCTTTTCTAAGCTGTATCTAGACTGCATTCCAAAAA 97666 || ||||| | || ||||| || | | | |||||| | | |||||| || || | Sbjct 9373158 GTTTGGTTGTGAGCAGTGGAAATTCATCTCTGAGGCTGTAGCGCGCCTGCATGCCGAACA 9373217 Query 97667 C 97667 | Sbjct 9373218 C 9373218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346634151924350