Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq35445 98.7 2e-15 >seq35445 Length=8324874 Score = 98.7 bits (108), Expect = 2e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 51901 TGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCATACTTAGG 51960 |||| ||||| ||||| || || || || || ||||| || || |||||||| || ||| Sbjct 3845014 TGGTGGTACTTCATATCTAAGGGAATTGAGTATTTGGACACAGTGTTTTTCATCCTGAGG 3844955 Query 51961 AAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGTTTACTCTA 52020 || ||| || || || ||| || |||||||||||||| | ||| |||||||| | Sbjct 3844954 AAGAAAAACAACCAAGTCTCTTTCCTTCACGTATATCATCACTGTACAATGTTTACATTG 3844895 Query 52021 GGATGGATAGGTATTAAATGGTTTGCTGGAGGTCAGG 52057 | ||||| || ||||| ||| | || || || |||| Sbjct 3844894 TGGTGGATTGGAATTAAGTGGGTCGCAGGGGGACAGG 3844858 Score = 96.9 bits (106), Expect = 6e-15 Identities = 102/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||| ||||| ||||| ||||| || |||||||| |||||||| | || ||||| Sbjct 3843823 GCATTTTTCGGAGCCCAGCTGAATTCCTTCATCCATGTGATTATGTATTCATACTATGGG 3843764 Query 52117 ATGGCCGCTTGTGGTCCTATG-TTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 || | || | ||| || | ||||||| |||||| ||||||||||| || || || || Sbjct 3843763 TTGACTGCCTTTGGCCCGTGGATTCAGAA-GTATCTTTGGTGGAAACGATACCTGACCAT 3843705 Query 52176 AATGCAGTTGGT 52187 ||||| |||| Sbjct 3843704 GTTGCAGCTGGT 3843693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922787650718200