Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq6122 100 3e-16 seq8041 98.7 1e-15 seq4303 98.7 1e-15 seq1692 98.7 1e-15 seq6813 96.9 4e-15 seq3552 95.1 1e-14 seq3939 91.5 2e-13 seq1683 89.7 6e-13 >seq6122 Length=7170238 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 2183557 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 2183498 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 2183497 ATACTAACGAGGA 2183485 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 4037847 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 4037788 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 4037787 ATACTAACGAGGA 4037775 >seq8041 Length=9355897 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 8409297 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 8409356 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 8409357 TACTAACGAGGA 8409368 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 8416170 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 8416229 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 8416230 TACTAACGAGGA 8416241 >seq4303 Length=2400573 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 2400069 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2400128 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 2400129 TACTAACGAGGA 2400140 >seq1692 Length=15556111 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1419758 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1419817 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1419818 TACTAACGAGGA 1419829 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| |||||| |||||||||||||| |||||||||||| Sbjct 1376188 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCTCGCGTGACAGGCGGGGATACTCACCACT 1376129 Query 60125 ATACTACCGAGGATTG 60140 |||||| |||||| || Sbjct 1376128 ATACTAACGAGGAATG 1376113 >seq6813 Length=4142589 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 1036303 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 1036362 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 1036363 ATACTAACGAGGA 1036375 >seq3552 Length=199577 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| |||| ||| ||| || ||||||||||| || | |||| || | || || Sbjct 80756 CACCAAGTGCAGGGTGGACTCTTTCTGAATATTGTAGTCTGATGGAGTGCGACCATCCTC 80815 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 ||||| || | || || || || |||||||||| | || | || ||||||||| Sbjct 80816 CAGCTGTTTGCTCGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTG 80875 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 |||||| ||||| || | ||||| || | || || || | |||||||| || Sbjct 80876 GATTTTAGCTTTGACATTCTCAGTGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTT 80935 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| | || ||||| ||||||| ||||| Sbjct 80936 GCCCATCAGGGTCTTCACAAAGACCTGCAT 80965 >seq3939 Length=6707506 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 || ||||| || | ||||| ||||||| |||||||||||||||| ||||| ||||| ||| Sbjct 39204 TTGTCTCCCCGTCGGGGAAGCGAACCCCGGTCTCCCGCGTGACAAGCGGAGATACTTACC 39145 Query 60122 ACTATACTACCGAGG 60136 ||||||||| ||||| Sbjct 39144 ACTATACTAACGAGG 39130 >seq1683 Length=8760594 Score = 89.7 bits (98), Expect = 6e-13 Identities = 147/210 (70%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| |||| | | ||||| | ||| |||| | | |||||| | |||| || Sbjct 1155919 CACCAAGTGCAGGGCGGACTCCT---GGATACTGTAGTGTGACAGAGTGTCCCCGTCCTC 1155975 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 ||||| || || || || || || |||||||||| | ||| | || ||||||||| Sbjct 1155976 CAGCTGTTTGCCCGCAAAAATCAGATGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTG 1156035 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 | |||| ||||| || | ||||| || | || || ||| ||||||| || Sbjct 1156036 GGTTTTAGCTTTGACATTCTCAGTGGTGTCACTGGGCTCAACC-CGAGGGTGATGGCCTT 1156094 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||||||| ||||| |||||||| ||||| Sbjct 1156095 GCCCGTTAGGGTCTTCACAAAGATCTGCAT 1156124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571564177587400