Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23]
35,455 sequences; 1,992,663,268 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq6122 100 3e-16
seq8041 98.7 1e-15
seq4303 98.7 1e-15
seq1692 98.7 1e-15
seq6813 96.9 4e-15
seq3552 95.1 1e-14
seq3939 91.5 2e-13
seq1683 89.7 6e-13
>seq6122
Length=7170238
Score = 100 bits (110), Expect = 3e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 2183557 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 2183498
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 2183497 ATACTAACGAGGA 2183485
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 4037847 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 4037788
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 4037787 ATACTAACGAGGA 4037775
>seq8041
Length=9355897
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 8409297 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 8409356
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 8409357 TACTAACGAGGA 8409368
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 8416170 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 8416229
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 8416230 TACTAACGAGGA 8416241
>seq4303
Length=2400573
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 2400069 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2400128
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 2400129 TACTAACGAGGA 2400140
>seq1692
Length=15556111
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1419758 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1419817
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 1419818 TACTAACGAGGA 1419829
Score = 96.9 bits (106), Expect = 4e-15
Identities = 67/76 (88%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| |||||| |||||||||||||| ||||||||||||
Sbjct 1376188 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCTCGCGTGACAGGCGGGGATACTCACCACT 1376129
Query 60125 ATACTACCGAGGATTG 60140
|||||| |||||| ||
Sbjct 1376128 ATACTAACGAGGAATG 1376113
>seq6813
Length=4142589
Score = 96.9 bits (106), Expect = 4e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 1036303 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 1036362
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 1036363 ATACTAACGAGGA 1036375
>seq3552
Length=199577
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033
|||||| |||| ||| ||| || ||||||||||| || | |||| || | || ||
Sbjct 80756 CACCAAGTGCAGGGTGGACTCTTTCTGAATATTGTAGTCTGATGGAGTGCGACCATCCTC 80815
Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093
||||| || | || || || || |||||||||| | || | || |||||||||
Sbjct 80816 CAGCTGTTTGCTCGCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTG 80875
Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153
|||||| ||||| || | ||||| || | || || || | |||||||| ||
Sbjct 80876 GATTTTAGCTTTGACATTCTCAGTGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTT 80935
Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|||| | || ||||| ||||||| |||||
Sbjct 80936 GCCCATCAGGGTCTTCACAAAGACCTGCAT 80965
>seq3939
Length=6707506
Score = 91.5 bits (100), Expect = 2e-13
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121
|| ||||| || | ||||| ||||||| |||||||||||||||| ||||| ||||| |||
Sbjct 39204 TTGTCTCCCCGTCGGGGAAGCGAACCCCGGTCTCCCGCGTGACAAGCGGAGATACTTACC 39145
Query 60122 ACTATACTACCGAGG 60136
||||||||| |||||
Sbjct 39144 ACTATACTAACGAGG 39130
>seq1683
Length=8760594
Score = 89.7 bits (98), Expect = 6e-13
Identities = 147/210 (70%), Gaps = 4/210 (2%)
Strand=Plus/Plus
Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033
|||||| |||| | | ||||| | ||| |||| | | |||||| | |||| ||
Sbjct 1155919 CACCAAGTGCAGGGCGGACTCCT---GGATACTGTAGTGTGACAGAGTGTCCCCGTCCTC 1155975
Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093
||||| || || || || || || |||||||||| | ||| | || |||||||||
Sbjct 1155976 CAGCTGTTTGCCCGCAAAAATCAGATGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTG 1156035
Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153
| |||| ||||| || | ||||| || | || || ||| ||||||| ||
Sbjct 1156036 GGTTTTAGCTTTGACATTCTCAGTGGTGTCACTGGGCTCAACC-CGAGGGTGATGGCCTT 1156094
Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||||||||| ||||| |||||||| |||||
Sbjct 1156095 GCCCGTTAGGGTCTTCACAAAGATCTGCAT 1156124
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571564177587400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |