Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq7851 1898 0.0 seq3785 91.5 1e-13 seq1692 84.2 2e-11 >seq7851 Length=9529907 Score = 1898 bits (2104), Expect = 0.0 Identities = 1452/1723 (84%), Gaps = 49/1723 (3%) Strand=Plus/Minus Query 107071 GTCCTAACTCCAGTCCCAGCATGACTAGCTGGTTTGCAGCATCAGGTTACAGATGTCCAT 107130 ||||||| |||| ||||||| || |||| ||| || |||||| | ||| ||||| Sbjct 3086700 GTCCTAATCCCAGCCCCAGCACGATCAGCT---TTGTAGGGTCAGGTGAGAGAACTCCAT 3086644 Query 107131 CCACA-------------AGGGTCTTAGGCAGGACTTGACTGAGGATATTTGTCTATAGA 107177 | || ||| || ||||| | || ||||||||||| ||||||| ||| Sbjct 3086643 CAGCAGGCTGGGTGTATGAGGATCCTAGGCGGATCTGGACTGAGGATACTTGTCTAGAGA 3086584 Query 107178 AGACATCTATCTTTACCATCACTCTGGAGTTGAACTTGATGTTCT-------------GG 107224 ||| |||| ||| |||||||| |||||||||||||||||||| || Sbjct 3086583 AGAAATCTGGTTTTGCCATCACTGTGGAGTTGAACTTGATGTTCCTTGAGCCCATTCAGG 3086524 Query 107225 ATTAGTTTGTAATTAAAGGCATTTTGTTCTGTCCAAGGATCTCCTCCTCCACCTTGCCTG 107284 |||||||||||||| |||||||||||||||||| |||||| || |||||| |||| |||| Sbjct 3086523 ATTAGTTTGTAATTGAAGGCATTTTGTTCTGTCTAAGGATTTCATCCTCCTCCTTCCCTG 3086464 Query 107285 TGCCCAAACTCTCCTGATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTG 107344 ||| |||||||| | ||||||||| ||| ||||||| || ||||||||||||| | || Sbjct 3086463 TGCACAAACTCTGCCAATCTCCCATTCCACGAAGATGACTTGGTGGAAGAAGAAATTCTG 3086404 Query 107345 CCGGGGACATCATCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAG 107404 |||| | |||||||||||||| ||||||||||||||||||||||| ||||| || |||| Sbjct 3086403 CCGGAGGCATCATCTGTGGGCTTTGGGCTGCTATATGCTGCTGGCCCTTGTTGCTTTGAG 3086344 Query 107405 ACTTTCCCTCAGGTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCA 107464 |||||| ||||| | |||||||| |||| |||| |||||||||||||||||||||| || Sbjct 3086343 ACTTTCTCTCAGACTGAAATGTGACGTAGTTTCCCTGGATCTGGAGTCCAGGGACTTGCA 3086284 Query 107465 GAGTCAGCACTGTAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCAT 107524 || ||||||||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 3086283 AAGCCAGCACTGTAGGGACATCTTGTACAAGTCCCTGAAGCTGCCAGCAAAGAGATCCAT 3086224 Query 107525 CAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAA 107584 |||||||||||||||||| ||||||||||||||||||||| || |||| ||||| ||||| Sbjct 3086223 CAACTGTTCTGGGATCACCCGAGGGGACCAGGAAGCAGTGATCAAGGCTCTCCTGGACAA 3086164 Query 107585 CCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAG 107644 |||||| || ||||| |||||| |||| |||| | ||| | ||||||||||| ||||| Sbjct 3086163 CCTGGAGGTCAAGAAGAAGCGGGAGCCTTTCACAGACACTGACTACCTCAACATGACCAG 3086104 Query 107645 AGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGA 107704 |||||||||| || |||||| |||||| |||||||| |||||||||||| |||||||| Sbjct 3086103 GGACTGTGAGCAGTTTAAGGCCAAAAGGAGGTTCATACGGTTCCCACTGAGCAAAGAAGA 3086044 Query 107705 GCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACG 107764 ||||||| ||||| || ||||| |||||||||||||||||| |||||||||||||| | Sbjct 3086043 ATTAGACTTTCCCATCGCTTACTCTATGGTGGTCCATGAGAAGGTTGAAAACTTTGAAAG 3085984 Query 107765 GCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTC 107824 |||||||||||| |||||||||||||||||||||||||||||||| || |||| |||||| Sbjct 3085983 GCTGCTGCGAGCTGTGTATGCCCCTCAGAACATATACTGTGTCCATGTAGATGAGAAGTC 3085924 Query 107825 CCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCAT 107884 |||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||||||| Sbjct 3085923 CCCAGAAACTTTCAAAGAGGCAGTCAAGGCCATTATTTCATGCTTCCCGAATGTCTTCAT 3085864 Query 107885 GGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAA 107944 ||||||||| ||||| | |||||||||||||||||||||||| ||||| ||||||||||| Sbjct 3085863 GGCCAGTAAATTGGTTCGGGTGGTTTATGCCTCCTGGTCCAGGGTGCAGGCTGACCTGAA 3085804 Query 107945 CTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGG 108004 |||||||||||||||||||| |||| | ||||| ||||| ||||||||||| || ||||| Sbjct 3085803 CTGTATGGAAGACTTGCTCCGGAGCCCGGTGCCGTGGAAATACTTACTGAACACCTGCGG 3085744 Query 108005 GACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGG 108064 ||||||||| || |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 3085743 GACAGACTTTCCTATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAATGG 3085684 Query 108065 TAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCG 108124 ||||||||||||||||| ||| ||||| |||||| |||||| | |||||||||||| | Sbjct 3085683 GAAGAACAGTATGGAGTCAGAGATACCTACTGAGTACAAAAAGACTCGCTGGAAATATCA 3085624 Query 108125 CTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAA 108184 ||| || ||||||||||| || | |||| ||||||||||||||||||||||||||| Sbjct 3085623 CTACGAAGTGACAGACACGTTGCAAGTAACCAACAAGATGAAGGACCCTCCCCCTGATAA 3085564 Query 108185 TTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGT 108244 |||||| |||||||| |||||||||||| ||||||| ||||||| |||| |||||||||| Sbjct 3085563 TTTACCTATGTTCACGGGGAATGCCTATATTGTGGCTTCTCGAGGCTTTATCCAACATGT 3085504 Query 108245 CTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGA 108304 |||||| ||||| ||||||||| | ||| ||||||||| ||||||||||||||||||||| Sbjct 3085503 CTTAGAGAACCCCAAATCCCAACGGCTGATTGAATGGGCCAAAGACACCTATAGCCCCGA 3085444 Query 108305 CGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCA 108364 |||||||||||||| |||||||||||||| || |||||||||||||||||||| ||| Sbjct 3085443 TGAACACCTCTGGGCTACCCTTCAGCGTGCACCATGGATGCCTGGCTCTGTTCCCTACCA 3085384 Query 108365 CCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCA 108424 |||||||| ||||||||||||||||| |||||||||||||| ||||||||||| |||| Sbjct 3085383 CCCCAAGTTTCACATCTCAGACATGATGGCCATCGCCAGGCTGGTCAAGTGGCAAGACCA 3085324 Query 108425 CGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGC 108484 ||||||||| |||| |||||||| |||||||| || |||||||||||||| | | |||| Sbjct 3085323 CGAGGGAGACATCAGTATGGGGGCACCTTATGCCCCTTGCTCTGGAATCCACCAGCGGGC 3085264 Query 108485 CATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGC 108544 |||| |||| ||||| ||||||||| ||||||||||||||||||||||||| ||||| Sbjct 3085263 TGTCTGTGTTTATGGGGCTGGGGACCTGCACTGGATTCTCCAGAACCATCACCTGTTGGC 3085204 Query 108545 AAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACG 108604 |||||||||||||| | |||||||||||| || || ||||||||||||||||| |||| Sbjct 3085203 TAACAAGTTTGACCCCAAGGTGGATGATAATGTTCTTCAGTGCTTAGAAGAGTATTTACG 3085144 Query 108605 TCATAAGGCCATCTATGGGACTGAACTTTGAG----------------CTGC--ACTGTG 108646 ||||||||||||||||| ||||||| |||| |||| | | | Sbjct 3085143 CTATAAGGCCATCTATGGGGCTGAACTCTGAGATACACCTTGAGAGAACTGCTACCCGAG 3085084 Query 108647 GGCCAGGGACTG-TGCCAACATGCCCAGGGCGTACTGGTACTGTGTGGGGTGGGGGACGA 108705 || |||| || | || |||||||| ||| ||| |||| || |||||||| || ||| Sbjct 3085083 GGGCAGGAACAGATGTAAACATGCCTAGGACGTGCTGGGACATTGTGGGGT-GGAGACCG 3085025 Query 108706 GGGCTGTGGAATCCATGGCATCCCCCAGGGTCAGAGGGCTGCT 108748 ||||| ||||||||| |||||||||| | | || || ||||| Sbjct 3085024 GGGCTCTGGAATCCACGGCATCCCCCGGTGGAAGGGGACTGCT 3084982 >seq3785 Length=24937548 Score = 91.5 bits (100), Expect = 1e-13 Identities = 196/286 (69%), Gaps = 8/286 (3%) Strand=Plus/Plus Query 108276 GAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCT 108335 || |||| ||||| || || ||||| ||||| | ||||||||||| ||||| | | | Sbjct 6510637 GAGTGGGCAAAAGATACATACAGCCCAGACGAGTATCTCTGGGCCACTATTCAGAG-GAT 6510695 Query 108336 CCGTGGA-TGCCTGGCTC--TGTTCCTAGCCACCCCAAGTATCACATCTCAGACATG-AC 108391 | || | | || ||||| ||| | || | ||||| |||| ||||||||| || Sbjct 6510696 GCCTGAAGTCCCAGGCTCACTGTCCTTAAGTTCT--AAGTACGACATGTCAGACATGCAC 6510753 Query 108392 TGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCC 108451 | | || |||||| | || |||||||||||| || || || || || ||| || || Sbjct 6510754 T-CTATTGCCAGGTTTGTTAAGTGGCAGTACTTTGAAGGTGACGTTTCCAAGGGCGCCCC 6510812 Query 108452 TTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCT 108511 || | || ||| || ||||| | | | | || ||| ||| ||||| ||| | Sbjct 6510813 CTACCCGCCGTGCAGCGGCATCCACGTGCGCTCTGTATGTGTTTTCGGAGCCGGTGACTT 6510872 Query 108512 GTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 | ||||||| || || || ||||| || || || ||||||||| Sbjct 6510873 GAACTGGATGCTGCACGTGCACCACCTGTTTGCCAATAAGTTTGAC 6510918 >seq1692 Length=15556111 Score = 84.2 bits (92), Expect = 2e-11 Identities = 231/343 (67%), Gaps = 22/343 (6%) Strand=Plus/Minus Query 107697 AAAGAAGA-GCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAA 107755 |||||||| ||| ||||| || | || ||| ||||| ||||| | || | || || Sbjct 12828617 AAAGAAGAAGCT-GACTTTCCTTTGGCATACATTATGGTCATCCATCATAATTTCGATAA 12828559 Query 107756 CTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGA 107815 ||||| | |||| | | || | || |||||||| | |||||||| || ||||| Sbjct 12828558 CTTTGCAAGGCTCTTCAGGGCAATTTACATGCCTCAGAATGTTTACTGTGTTCATGTGGA 12828499 Query 107816 TGTGAAGTCCCCAGA-GACTTTCAAAGAGGCGGTCAAGGCCATTATTTC-CTGCTTCCCC 107873 || ||| | ||| || ||| ||||| || || || |||| | ||||||||| Sbjct 12828498 TGAGAAAGCGACAGTTGAATTT-AAAGATGCAGTGGAGAA-ATTACTGGGCTGCTTCCCA 12828441 Query 107874 AATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGG----TCCAGAGT 107929 |||| ||| |||| ||| ||| || ||||| |||| ||| ||||| | Sbjct 12828440 AATGCCTTTCTGGCTTCCAAGATGGAGCCAGTGGTCTATGG----TGGGATTTCCAGGCT 12828385 Query 107930 GCAAGCTGACCTGAACTGTATGGAAGA-CTT---GCTCCAGAGCTCAGTGCCATGGAAGT 107985 || |||||||||||||| || |||| ||| || |||| ||||| ||||||| Sbjct 12828384 CCAGGCTGACCTGAACTGCATCAAAGATCTTACAGCCTTAGAG----GTGCCCTGGAAGT 12828329 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 || | || || |||||| || |||||| | || ||||| Sbjct 12828328 ACGCCATCAACACCTGCGGGCAGGATTTCCCCCTGAAAACCAA 12828286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348118310330670