Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23]
35,455 sequences; 1,992,663,268 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq35448 131 2e-25
seq6502 120 4e-22
seq8229 107 2e-18
seq4475 98.7 1e-15
>seq35448
Length=3664250
Score = 131 bits (144), Expect = 2e-25
Identities = 111/137 (81%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447
|| || |||||||| ||||| ||||| || ||||| || |||||||| || ||||| |
Sbjct 107719 ACCTGAAATTCTCCTGACAAGACTCTGCGGGTGTAGATGTTACTGGTGTAAGGTTCAATT 107778
Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507
|||||||||||||||||||| ||||||||||| ||||| ||||| || || | | ||||
Sbjct 107779 GACTCATTATTTCCCAAAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 107838
Query 62508 CTATTTCTAAGACCGTA 62524
|| ||||| | ||| ||
Sbjct 107839 CTGTTTCTTATACCATA 107855
Score = 100 bits (110), Expect = 4e-16
Identities = 136/190 (72%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685
|||| || |||||||| || | || || || || | ||| || || || || || || |
Sbjct 111567 CATACGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 111626
Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745
||||||||||||||||||| | |||||| | || || ||||| || ||||| || |
Sbjct 111627 AATAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCCGGACTCTCAAAAGGGT 111686
Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805
| | | |||||||| || || || | ||||| || ||||| || || || | ||| |
Sbjct 111687 ATCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGACGATGGC 111746
Query 62806 TCTTATTAGA 62815
||||| ||
Sbjct 111747 GTTTATTTGA 111756
Score = 91.5 bits (100), Expect = 2e-13
Identities = 103/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322
|| |||||||||||| |||||||| ||||||||||| || | || || || || | |
Sbjct 116015 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 116074
Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382
|| ||||| |||||||| ||||| || | ||| || ||| | | || || |||||||
Sbjct 116075 CTGCTCCTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCA 116134
Query 63383 CGGTTCCAAGTATATGGC 63400
|| |||| ||| || ||
Sbjct 116135 AGGCTCCAGGTAAATAGC 116152
Score = 87.8 bits (96), Expect = 2e-12
Identities = 102/138 (74%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 63507 ATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTA 63566
|| |||| ||| | || |||||| ||| | | | ||| |||||||| ||| ||
Sbjct 119264 ATGTAGCTGCCAGTAGCTCGAATACAACTCACAGCAACACCAATTCCCCCAGCCGACTTG 119323
Query 63567 GAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATG 63626
|| || ||||| ||| | |||| |||||||| |||||||| ||||||||||| ||||
Sbjct 119324 GAAATCAATGCACATTGCTTTAGAGTGTCATAAATGCCTTCAATGCTATCATCTTTCATA 119383
Query 63627 TTAAGTAGAAAACAGCTA 63644
| || || |||||||||
Sbjct 119384 CTCAGAAGGAAACAGCTA 119401
>seq6502
Length=3845251
Score = 120 bits (132), Expect = 4e-22
Identities = 99/121 (82%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663
|||||||||| ||||| | ||| || ||||| ||||| || ||||| || || ||||| |
Sbjct 1107975 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCCGGCATCAGTCCTCGCTTCT 1108034
Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723
| ||||| ||||| || || || || || ||||||||||||||||| ||||| |||||||
Sbjct 1108035 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 1108094
Query 33724 C 33724
|
Sbjct 1108095 C 1108095
Score = 93.3 bits (102), Expect = 5e-14
Identities = 84/106 (79%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901
|||||||| || || || || | |||||||||||||| ||||| |||||||| |||||
Sbjct 1110090 ATCTTTAATGTAGGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 1110149
Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947
|| || || || |||||||| | || || |||||||| ||||||
Sbjct 1110150 AATTTGGAAGCCATAGAAACAACGGGCTTCTGTAATCTGAACTTCT 1110195
>seq8229
Length=12730356
Score = 107 bits (118), Expect = 2e-18
Identities = 88/107 (82%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548
|||||||||||||||| | ||| ||| | |||||||| || |||| |||||||| |||
Sbjct 6679896 GTTACTTTCTATGATGTGAATATTGTTCTGCAAGCTTTTATACTGACAACTGCAGTATTT 6679955
Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAA 188595
|||| | ||||| || |||||||||||| |||||||| ||||| ||
Sbjct 6679956 CTTGGTTTGACTGTATATACTCTACAATCTAAGAGAGACTTCAGCAA 6680002
Score = 98.7 bits (108), Expect = 1e-15
Identities = 85/104 (82%), Gaps = 1/104 (1%)
Strand=Plus/Plus
Query 188241 GCATTTCTAAGAAAAGTCTACGGTATCCTTG-TCTACAATTTCCTTTAACAACGGCAACA 188299
|| |||||||||||||||||| | |||||| ||| ||| ||| ||||| |||| |||
Sbjct 6675665 GCCTTTCTAAGAAAAGTCTACAGCATCCTTTCTCTGCAAGTTCTCTTAACTACGGTGACA 6675724
Query 188300 GCTGCAGTATTTTTATACTTTGAATGCATTCGGACATTTATACA 188343
||||| | |||||||||||||| | ||| ||||||||| ||||
Sbjct 6675725 TCTGCATTTTTTTTATACTTTGATTCCATACGGACATTTGTACA 6675768
Score = 95.1 bits (104), Expect = 2e-14
Identities = 63/70 (90%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231
|||||||| |||||||||||||||||||||| ||||| ||||| || ||||||||||||
Sbjct 6666857 TGCTCCTCGATCGAGGACGACTTCAACTATGGCAGCTGCGTGGCCTCCGCCAGCGTGCAC 6666916
Query 188232 ATACGAATGG 188241
|| |||||||
Sbjct 6666917 ATCCGAATGG 6666926
Score = 91.5 bits (100), Expect = 2e-13
Identities = 67/78 (86%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 188378 GGATCTATAGGCTTGATTTTCGCATTGACTTTACACAGACATAAACATCCCCTGAATCTG 188437
|||||| | || ||||||||||| |||||||| |||||||||| |||||||| || |||
Sbjct 6676875 GGATCTTTGGGTTTGATTTTCGCCCTGACTTTAAACAGACATAAGCATCCCCTTAACCTG 6676934
Query 188438 TACCTACTTTGTGGATTT 188455
||||| |||| |||||||
Sbjct 6676935 TACCTGCTTTTTGGATTT 6676952
>seq4475
Length=11054148
Score = 98.7 bits (108), Expect = 1e-15
Identities = 93/119 (78%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665
|| ||||| || || | ||| || ||||| ||||| || ||||| || || | ||| ||
Sbjct 3068327 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGGCCAGGCATAAGACCTCTCTTCTTC 3068386
Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724
||||||||||| | ||| || || || || ||||| |||||||| || |||||||||||
Sbjct 3068387 AGCCAAAATATAGCAGCAAAAGAGCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGGC 3068445
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629538472712400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |