Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq8229 176 6e-39 seq35448 134 2e-26 seq6502 129 8e-25 seq4475 102 1e-16 >seq8229 Length=12730356 Score = 176 bits (194), Expect = 6e-39 Identities = 160/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAG 9290 || |||||| | ||||||||| | | |||||||||| |||||||||||||||||||||| Sbjct 6686566 TTTTTATTAACTGCTTCCAAAATCCGCAACAGATGCAGGAACAGATTGATGATATCCAAG 6686507 Query 9291 TAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGC 9350 |||| |||| | ||||| || || ||||| || || ||| | || || |||||||| Sbjct 6686506 TAGAGGCTGATGGCAGCTAATACGTACTCTTCGGGTGACAGCCTGTGCATCAGTGAGTGG 6686447 Query 9351 GTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCC 9410 ||||||||||| |||||||||||||| | |||||| || | | ||| || || || |||| Sbjct 6686446 GTGTCATAGATGATGAATCCGCAGAAAAGAAGGGCTCCTACACCAGCCAAGAGCAACTCC 6686387 Query 9411 ACTGTTTCACTTTGCACAAATA 9432 || || ||||| | | ||||| Sbjct 6686386 ACCGTCTCACTGTAAAAAAATA 6686365 Score = 138 bits (152), Expect = 1e-27 Identities = 102/119 (86%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 ||| |||||| || ||||| |||||||| ||||||||||||||| |||||| | ||||| Sbjct 6680014 CCTCCTCCAAACTTGCTGAAGTCTCTCTTAGATTGTAGAGTATATACAGTCAAACCAAGA 6679955 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || |||||||| ||||| || |||||||||| ||| | || |||||||||||||||||| Sbjct 6679954 AATACTGCAGTTGTCAGTATAAAAGCTTGCAGAACAATATTCACATCATAGAAAGTAAC 6679896 Score = 102 bits (112), Expect = 1e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 9744 TGTATAATTTTCCGCATGCAGTCAAAGTATAAAAATACTGCAGTTGTTGCCGTTGTTAAA 9803 |||| || | |||| ||| | |||||||||||||| | ||||| ||| |||| ||||| Sbjct 6675768 TGTACAAATGTCCGTATGGAATCAAAGTATAAAAAAAATGCAGATGTCACCGTAGTTAAG 6675709 Query 9804 AGAAATTGTAGACAAAGGATACCGTAGACTTTTCTTAGAAATGC 9847 |||| ||| ||| ||||||| | |||||||||||||||||| || Sbjct 6675708 AGAACTTGCAGAGAAAGGATGCTGTAGACTTTTCTTAGAAAGGC 6675665 Score = 100 bits (110), Expect = 4e-16 Identities = 90/112 (80%), Gaps = 7/112 (6%) Strand=Plus/Minus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 ||||||| |||||||| ||||| || ||||| ||||||||||||||||||||||||||| Sbjct 6666926 CCATTCGGATGTGCACGCTGGCGGAGGCCACGCAGCTGCCATAGTTGAAGTCGTCCTCGA 6666867 Query 9907 TGGAGGAGCACGCGTAGAGG-----CTCGGCATGGCCATGGCGGCGCAGACC 9953 | |||||||| | |||| || || | || |||||| ||| |||||| Sbjct 6666866 TCGAGGAGCAGGGGTAGCGGGGGTCCTGGTCA--GCCATGTTGGCACAGACC 6666817 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 9632 AAATCCACAAAGCAGGTATAAATTCAGGGGATGTTTATGTCTGTGTAAAGTCAATGCGAA 9691 ||||||| |||||||||| | || |||||||| |||||||||| |||||||| ||||| Sbjct 6676952 AAATCCAAAAAGCAGGTACAGGTTAAGGGGATGCTTATGTCTGTTTAAAGTCAGGGCGAA 6676893 Query 9692 AATCAAGCCTATAGAT 9707 |||||| || | |||| Sbjct 6676892 AATCAAACCCAAAGAT 6676877 >seq35448 Length=3664250 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| ||||| || ||||| || |||||||| || ||||| | Sbjct 107719 ACCTGAAATTCTCCTGACAAGACTCTGCGGGTGTAGATGTTACTGGTGTAAGGTTCAATT 107778 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 |||||||||||||||||||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 107779 GACTCATTATTTCCCAAAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 107838 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 107839 CTGTTTCTTATACCATA 107855 Score = 95.1 bits (104), Expect = 2e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478 |||| || || ||||| || | || || || || ||||| || || || || || || | Sbjct 111567 CATACGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 111626 Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 65538 ||||||||||||| ||||| | |||||| | || || ||| | || ||||| || | Sbjct 111627 AATAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCCGGACTCTCAAAAGGGT 111686 Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598 | | | |||||||| || ||||| | ||||| || ||||| || || || | ||| | Sbjct 111687 ATCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGACGATGGC 111746 Query 65599 TCTTATTAGA 65608 ||||| || Sbjct 111747 GTTTATTTGA 111756 Score = 93.3 bits (102), Expect = 6e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| |||||||||||||| | || || || || || || || || | | Sbjct 127727 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCAGGA 127786 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||||| || || || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 127787 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTATCTA 127846 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 |||| || || || || ||| | || | |||||||| || ||||| Sbjct 127847 ATTCCACAGTAGTGACCCCACTGTACAAGCCTTGGATTACTTTCAT 127892 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||||||||| |||||||| ||||||||||| || | || | || |||| | Sbjct 116015 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 116074 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 || ||||| |||||||| ||||| || | ||| || ||| | | || || ||||||| Sbjct 116075 CTGCTCCTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCA 116134 Query 66176 CGGTTCCAAGTATATGGC 66193 || |||| ||| || || Sbjct 116135 AGGCTCCAGGTAAATAGC 116152 >seq6502 Length=3845251 Score = 129 bits (142), Expect = 8e-25 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||||||||| ||||| | ||| |||||||| ||||| || ||||| || || ||||| | Sbjct 1107975 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCCGGCATCAGTCCTCGCTTCT 1108034 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| ||||| || ||||| || ||||||||||| |||||||| ||||| ||||||| Sbjct 1108035 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 1108094 Query 36300 C 36300 | Sbjct 1108095 C 1108095 Score = 102 bits (112), Expect = 1e-16 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||||| || || ||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 1110090 ATCTTTAATGTAGGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 1110149 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 ||||| || || |||||||| | || || |||||||| |||||| Sbjct 1110150 AATTTGGAAGCCATAGAAACAACGGGCTTCTGTAATCTGAACTTCT 1110195 >seq4475 Length=11054148 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || ||||| || || | ||| |||||||| ||||| || ||||| || || | ||| || Sbjct 3068327 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGGCCAGGCATAAGACCTCTCTTCTTC 3068386 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 ||||||||||| | ||||| || || || |||||||||||||| || || |||||||| Sbjct 3068387 AGCCAAAATATAGCAGCAAAAGAGCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGGC 3068445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657881106042200