Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23]
35,455 sequences; 1,992,663,268 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq8229 176 6e-39
seq35448 134 2e-26
seq6502 129 8e-25
seq4475 102 1e-16
>seq8229
Length=12730356
Score = 176 bits (194), Expect = 6e-39
Identities = 160/202 (79%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAG 9290
|| |||||| | ||||||||| | | |||||||||| ||||||||||||||||||||||
Sbjct 6686566 TTTTTATTAACTGCTTCCAAAATCCGCAACAGATGCAGGAACAGATTGATGATATCCAAG 6686507
Query 9291 TAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGC 9350
|||| |||| | ||||| || || ||||| || || ||| | || || ||||||||
Sbjct 6686506 TAGAGGCTGATGGCAGCTAATACGTACTCTTCGGGTGACAGCCTGTGCATCAGTGAGTGG 6686447
Query 9351 GTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCC 9410
||||||||||| |||||||||||||| | |||||| || | | ||| || || || ||||
Sbjct 6686446 GTGTCATAGATGATGAATCCGCAGAAAAGAAGGGCTCCTACACCAGCCAAGAGCAACTCC 6686387
Query 9411 ACTGTTTCACTTTGCACAAATA 9432
|| || ||||| | | |||||
Sbjct 6686386 ACCGTCTCACTGTAAAAAAATA 6686365
Score = 138 bits (152), Expect = 1e-27
Identities = 102/119 (86%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539
||| |||||| || ||||| |||||||| ||||||||||||||| |||||| | |||||
Sbjct 6680014 CCTCCTCCAAACTTGCTGAAGTCTCTCTTAGATTGTAGAGTATATACAGTCAAACCAAGA 6679955
Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598
|| |||||||| ||||| || |||||||||| ||| | || ||||||||||||||||||
Sbjct 6679954 AATACTGCAGTTGTCAGTATAAAAGCTTGCAGAACAATATTCACATCATAGAAAGTAAC 6679896
Score = 102 bits (112), Expect = 1e-16
Identities = 85/104 (82%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 9744 TGTATAATTTTCCGCATGCAGTCAAAGTATAAAAATACTGCAGTTGTTGCCGTTGTTAAA 9803
|||| || | |||| ||| | |||||||||||||| | ||||| ||| |||| |||||
Sbjct 6675768 TGTACAAATGTCCGTATGGAATCAAAGTATAAAAAAAATGCAGATGTCACCGTAGTTAAG 6675709
Query 9804 AGAAATTGTAGACAAAGGATACCGTAGACTTTTCTTAGAAATGC 9847
|||| ||| ||| ||||||| | |||||||||||||||||| ||
Sbjct 6675708 AGAACTTGCAGAGAAAGGATGCTGTAGACTTTTCTTAGAAAGGC 6675665
Score = 100 bits (110), Expect = 4e-16
Identities = 90/112 (80%), Gaps = 7/112 (6%)
Strand=Plus/Minus
Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906
||||||| |||||||| ||||| || ||||| |||||||||||||||||||||||||||
Sbjct 6666926 CCATTCGGATGTGCACGCTGGCGGAGGCCACGCAGCTGCCATAGTTGAAGTCGTCCTCGA 6666867
Query 9907 TGGAGGAGCACGCGTAGAGG-----CTCGGCATGGCCATGGCGGCGCAGACC 9953
| |||||||| | |||| || || | || |||||| ||| ||||||
Sbjct 6666866 TCGAGGAGCAGGGGTAGCGGGGGTCCTGGTCA--GCCATGTTGGCACAGACC 6666817
Score = 84.2 bits (92), Expect = 3e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 9632 AAATCCACAAAGCAGGTATAAATTCAGGGGATGTTTATGTCTGTGTAAAGTCAATGCGAA 9691
||||||| |||||||||| | || |||||||| |||||||||| |||||||| |||||
Sbjct 6676952 AAATCCAAAAAGCAGGTACAGGTTAAGGGGATGCTTATGTCTGTTTAAAGTCAGGGCGAA 6676893
Query 9692 AATCAAGCCTATAGAT 9707
|||||| || | ||||
Sbjct 6676892 AATCAAACCCAAAGAT 6676877
>seq35448
Length=3664250
Score = 134 bits (148), Expect = 2e-26
Identities = 112/137 (82%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240
|| ||||||||||| ||||| ||||| || ||||| || |||||||| || ||||| |
Sbjct 107719 ACCTGAAATTCTCCTGACAAGACTCTGCGGGTGTAGATGTTACTGGTGTAAGGTTCAATT 107778
Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300
|||||||||||||||||||| ||||||||||| ||||| ||||| || || | | ||||
Sbjct 107779 GACTCATTATTTCCCAAAATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 107838
Query 65301 CTATTTCTAAGACCGTA 65317
|| ||||| | ||| ||
Sbjct 107839 CTGTTTCTTATACCATA 107855
Score = 95.1 bits (104), Expect = 2e-14
Identities = 135/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478
|||| || || ||||| || | || || || || ||||| || || || || || || |
Sbjct 111567 CATACGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 111626
Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 65538
||||||||||||| ||||| | |||||| | || || ||| | || ||||| || |
Sbjct 111627 AATAAATGGTTTCAAAGATTTGCTTATTCAATAACTGGGCCTCCGGACTCTCAAAAGGGT 111686
Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598
| | | |||||||| || ||||| | ||||| || ||||| || || || | ||| |
Sbjct 111687 ATCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGACGATGGC 111746
Query 65599 TCTTATTAGA 65608
||||| ||
Sbjct 111747 GTTTATTTGA 111756
Score = 93.3 bits (102), Expect = 6e-14
Identities = 120/166 (72%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858
|||| || | ||| |||||||||||||| | || || || || || || || || | |
Sbjct 127727 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCAGGA 127786
Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918
||||||| || || || | ||||| | || || ||| |||| || |||| ||| || |
Sbjct 127787 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTATCTA 127846
Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964
|||| || || || || ||| | || | |||||||| || |||||
Sbjct 127847 ATTCCACAGTAGTGACCCCACTGTACAAGCCTTGGATTACTTTCAT 127892
Score = 91.5 bits (100), Expect = 2e-13
Identities = 103/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115
|| |||||||||||| |||||||| ||||||||||| || | || | || |||| |
Sbjct 116015 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 116074
Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175
|| ||||| |||||||| ||||| || | ||| || ||| | | || || |||||||
Sbjct 116075 CTGCTCCTCCTTTCCTGTGTTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCA 116134
Query 66176 CGGTTCCAAGTATATGGC 66193
|| |||| ||| || ||
Sbjct 116135 AGGCTCCAGGTAAATAGC 116152
>seq6502
Length=3845251
Score = 129 bits (142), Expect = 8e-25
Identities = 101/121 (83%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||||||||| ||||| | ||| |||||||| ||||| || ||||| || || ||||| |
Sbjct 1107975 CCTCGTCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCCGGCATCAGTCCTCGCTTCT 1108034
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| ||||| ||||| || ||||| || ||||||||||| |||||||| ||||| |||||||
Sbjct 1108035 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCGGCAAAGG 1108094
Query 36300 C 36300
|
Sbjct 1108095 C 1108095
Score = 102 bits (112), Expect = 1e-16
Identities = 86/106 (81%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477
|||||||| || || ||||| | |||||||||||||| ||||| |||||||| |||||
Sbjct 1110090 ATCTTTAATGTAGGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 1110149
Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523
||||| || || |||||||| | || || |||||||| ||||||
Sbjct 1110150 AATTTGGAAGCCATAGAAACAACGGGCTTCTGTAATCTGAACTTCT 1110195
>seq4475
Length=11054148
Score = 102 bits (112), Expect = 1e-16
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241
|| ||||| || || | ||| |||||||| ||||| || ||||| || || | ||| ||
Sbjct 3068327 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGGCCAGGCATAAGACCTCTCTTCTTC 3068386
Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300
||||||||||| | ||||| || || || |||||||||||||| || || ||||||||
Sbjct 3068387 AGCCAAAATATAGCAGCAAAAGAGCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGGC 3068445
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657881106042200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |