Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq1473 269 2e-67 seq5010 145 7e-30 seq2156 93.3 4e-14 >seq1473 Length=14027634 Score = 269 bits (298), Expect = 2e-67 Identities = 492/716 (69%), Gaps = 7/716 (1%) Strand=Plus/Plus Query 20924 CAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCC 20983 ||| || ||| ||| || ||||| ||| || || ||||| ||||| |||| ||| || Sbjct 9372598 CAGTGGCTCAGTGTGATTCAGGTAAATGTGTGCATCTCCCAAAGTGTGTACAAGGTCACC 9372657 Query 20984 CGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTT 21043 || ||||||| |||| ||| || |||| || || || || | ||||||||||||||| Sbjct 9372658 TGGCTTCAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGAGAGTAGCTGGCGATGTT 9372717 Query 21044 AAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCC 21103 || || || || ||||||||||| | |||| || |||||||||||||||||||| || Sbjct 9372718 GAAGGGCACGCCCAGGCCCATGTCTCCTGACCGCTCATACAGCTGGCAGGACAGCTCACC 9372777 Query 21104 CCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTC 21163 ||||||| ||||| || | | || || || ||||| ||| | ||| ||||| Sbjct 9372778 GTTCACCACGTAGAACTGGCAAAGGGCATGGCAGGGTGGGAGGGCCGTGAGCGGGAGGTG 9372837 Query 21164 CGCGGGGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATC 21223 || ||||| || ||||| | ||| | | || | || | || ||| || Sbjct 9372838 TTTTGGATTCCAGGCACACATGATGATTCTTCTGTCATTAGGGTTGGTTTTGATTGTGTC 9372897 Query 21224 CACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTA 21283 ||| | |||| ||||| || || | || || | | || | | ||| Sbjct 9372898 AGTCACCTTCTGCAGTTGGTCTACTCCTTTGCCTGAATAATCTGAATCCGTATCTTCGTA 9372957 Query 21284 CTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGC-GGC 21342 || ||||||||||| |||||||| || | ||| || || || ||||| || || | || Sbjct 9372958 TTCGGCCCCAAAATGCCTCCACTGAAAGCGGTATACTGGGCCTAGATCTCCTTCTCTGGT 9373017 Query 21343 GGTCCCCGAAGCCCTGCGCCG-CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTT 21401 || ||| ||| | || | |||| | | | |||||||| |||||||| ||||| Sbjct 9373018 GG----AGAATCCCAG-GCTGTCCAAGACGCCTCGGGACCCACTGGCGTCCCAGATTTTC 9373072 Query 21402 ACGCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCC 21461 || || | ||||| || | | || ||||| ||| |||||||||||||||| ||| Sbjct 9373073 ACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCCCTTGATAAACCACAGCAATTCC 9373132 Query 21462 TCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAACTCGTCCCTGAGG 21521 |||| || ||| |||| || || | |||||| || | ||| ||||| || || |||||| Sbjct 9373133 TCCAAAACACCCTTCCAGAAAACACGTTTGGTTGTGAGCAGTGGAAATTCATCTCTGAGG 9373192 Query 21522 TTATATCGGGCCTGAAGCCCGAACACGGACCTGGTGCCCACGCCCGTCCTGTCCTCCCTC 21581 | || || ||||| | |||||||| ||| |||||| |||||| | ||| ||| || Sbjct 9373193 CTGTAGCGCGCCTGCATGCCGAACACCGACAGGGTGCCGGTGCCCGTGCGGTCGTCCTTC 9373252 Query 21582 TGCACGCCGTGTTTAATAATTAAATCCAGGTGCGCCAAGTACTGCAGCTCGCCGTG 21637 | |||| | || | | | ||| |||||||||||||||| ||||| Sbjct 9373253 CGGGAGCCGCAGCGGAGGATGTACTTAATCTGCCCCAAGTACTGCAGCTCCCCGTG 9373308 >seq5010 Length=10235142 Score = 145 bits (160), Expect = 7e-30 Identities = 137/175 (78%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 ||||||| |||| ||| ||||||| || || || |||| ||||||||||||||| || | Sbjct 3047451 TCAGGCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGG 3047392 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | |||| |||||||||||||||||||||||| || Sbjct 3047391 GCACGCCCAGGCCCATGTCTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCA 3047332 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTC 21163 ||||||| ||||| || | |||| || || ||||| ||||| ||| ||| || Sbjct 3047331 CCACGTAGAACTGGCAAAGGGCGTGGCAGGGCGGGAGGGCCATGAGCGGGAGATC 3047277 >seq2156 Length=6750109 Score = 93.3 bits (102), Expect = 4e-14 Identities = 151/216 (70%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022 || || ||||| || || |||| || ||||| || ||||| || || ||||| ||| Sbjct 6386587 TTTAAGGCATCATCCAGACTTCTGGCAAGAAAATGAGCTCCTTGTGGAGGTTCCTTGAAT 6386528 Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTC-ACCAGAGGGCGCTTCTTTTCAGGGATGGA 3081 ||||| || | || | ||||||||||| | | ||| || ||||| || || ||||| Sbjct 6386527 TCTCTACTGAGAACTAAATTAATTCTGTCCTTTTAAAGGTCGATTCTTCTCTGGAATGGA 6386468 Query 3082 AAACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGA 3141 ||||| || || | || ||||| |||| ||||| || |||| | || || | | | Sbjct 6386467 GAACCAGGTCTTTCTACCAATAATCACCAAATTCTGTTTACCTTCTACTGAAGAGGCTGT 6386408 Query 3142 CGTCATTTTCTGAAAATACATCATTTCGTTTCTAAG 3177 |||||| | | |||||| | | ||| || || || Sbjct 6386407 GGTCATTCTTTTGAAATACTTAAATTCATTCCTGAG 6386372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427591154648400