Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq459 134 3e-26 seq3552 116 9e-21 seq3956 105 2e-17 seq35445 100 7e-16 seq6502 89.7 1e-12 >seq459 Length=3563100 Score = 134 bits (148), Expect = 3e-26 Identities = 170/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || || ||||| || || || ||| Sbjct 2213892 ATACCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCA 2213833 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || ||||| || || || || || || || |||||||| || |||||| Sbjct 2213832 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCGAAGATGAGCCTCTGCTGGTCAGGA 2213773 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || |||||||| ||||| || || ||||| || | ||| || || || || Sbjct 2213772 GGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCC 2213713 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| || || || ||||| || || | || || || || |||||||||||| Sbjct 2213712 ACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCATTTTG 2213659 >seq3552 Length=199577 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||||||||| ||||| ||| |||| | ||| || || || ||||| | Sbjct 80769 GTGGACTCTTTCTGAATATTGTAGTCTGATGGAGTGCGACCATCCTCCAGCTGTTTGCTC 80828 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || ||| || ||||| || || || || || || || || || ||||| Sbjct 80829 GCAAAAATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATTTTAGCTTTG 80888 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || ||| || || || || ||||| || || || ||||| || | || || Sbjct 80889 ACATTCTCAGTGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCCATCAGGGTC 80948 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| | |||||| Sbjct 80949 TTCACAAAGACCTGCAT 80965 >seq3956 Length=2629880 Score = 105 bits (116), Expect = 2e-17 Identities = 243/365 (67%), Gaps = 12/365 (3%) Strand=Plus/Minus Query 65639 TCCAGTAGAACCAAAACCACAGGACCCTCTTTCTGTTATATCTATAGCATCTACAGAAAG 65698 |||||| ||||||||||| | || || ||||| || ||||| | | | Sbjct 1809088 TCCAGTGGAACCAAAACCTCCTGAGCCCCTTTCAGTGTCATCTAACACTT---------G 1809038 Query 65699 AGCCTCCCTTATTTCTGGTTGTGCTATTTTTTCAAATATGATTTGAGCTACTCTATCGCC 65758 | | ||| ||||||||| || || | |||| | |||| || || | || ||| || Sbjct 1809037 AACTTCCTCTATTTCTGGGTGGAAAATCTGTTCACAAATGAGCTGTGCAATTCGATCACC 1808978 Query 65759 TTTACATATATTAAACTCCTCCTTACCGAAATTAAATATTAATATTCCAACATTACCTCT 65818 || | | ||||| || || || |||||||||| || | |||||||| ||| | Sbjct 1808977 CTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAATAGTACAACACCAACATTTCCTGT 1808918 Query 65819 ATAGTCTGAATCTATAACACCAGCACCTACATCTATAAAGTAATTATACGCTAATCCAGA 65878 ||| ||| |||| | |||||||| ||||||||||| |||| || || || || || Sbjct 1808917 ATAATCTTCATCTGTGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCTGA 1808858 Query 65879 TCGGGGAGCTATTCTACCATAATATCCTCTAGGAACTGATATAATCAAA--TCAGTAAAT 65936 || ||||||| ||| || || || || ||||| | ||| | ||| || || Sbjct 1808857 ACGTGGAGCTACTCTCCCGTAGTACCCAGAAGGAAGAGCTAT-CTGAAATGTCGGTTTTC 1808799 Query 65937 ACCAATTCTTTGTCCATGGGTTGTACGGTATAATCGTACGCGCTATATAGATCATATCCT 65996 || | | || ||||||||| | | || ||| |||| || || || || ||||| || Sbjct 1808798 ACAAGGGCCTTCTCCATGGGTGATGCTGTGTAAGCGTAGGCACTGTACAGGTCATAGCCC 1808739 Query 65997 GCAGC 66001 || || Sbjct 1808738 GCGGC 1808734 >seq35445 Length=8324874 Score = 100 bits (110), Expect = 7e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553 |||||||| | || ||||| ||||| || || | || || | || |||||||| | Sbjct 3845014 TGGTGGTACTTCATATCTAAGGGAATTGAGTATTTGGACACAGTGTTTTTCATCCTGAGG 3844955 Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTTTG 78613 |||||| || ||| | ||| || || ||||||||||| | ||| |||||||| ||| Sbjct 3844954 AAGAAAAACAACCAAGTCTCTTTCCTTCACGTATATCATCACTGTACAATGTTTACATTG 3844895 Query 78614 GGATGGATAGGTATTAAATGGTTCGCAGGAGGACA 78648 | ||||| || ||||| ||| ||||||| ||||| Sbjct 3844894 TGGTGGATTGGAATTAAGTGGGTCGCAGGGGGACA 3844860 >seq6502 Length=3845251 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 269492 GTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTC 269551 || |||||||| ||| |||||||||||||| ||| | ||||| ||| |||| ||||| Sbjct 1106727 GTAGAAAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTTT 1106668 Query 269552 GAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAAAATATT 269611 |||||| | ||| | | ||||||| ||||| || ||||| | | | ||| ||| | Sbjct 1106667 GAGAAGAGAGTAGGCGAGTATCAGAGGATGGGAGTGATGTCCAGTCCAACAGAGAATTCT 1106608 Query 269612 TTCACTACAGATGCAGAATTCTAA 269635 || || ||||| || |||||| Sbjct 1106607 TTTACCTTGGATGCTGACTTCTAA 1106584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150875357487140