Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23]
35,455 sequences; 1,992,663,268 total letters
Query= NC_005832.1
Length=106332
Score E
Sequences producing significant alignments: (Bits) Value
seq1473 223 2e-53
seq5010 109 4e-19
>seq1473
Length=14027634
Score = 223 bits (246), Expect = 2e-53
Identities = 398/578 (69%), Gaps = 5/578 (1%)
Strand=Plus/Plus
Query 25388 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTA 25447
|||||||| || || || | | ||||| | ||||| || || ||||| ||||||
Sbjct 9372563 GGGAAAGGC-CTTGGTTCTCGCGGAAGCTGCATTTTCAGTGGCTCAGTGTGATTCAGGTA 9372621
Query 25448 GACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGC 25507
| ||| || ||||||| |||||| |||| || || || | || || || | || ||
Sbjct 9372622 AATGTGTGCATCTCCCAAAGTGTGTACAAGGTCACCTGGCTTCAGGCCTGTGATGTGTGC 9372681
Query 25508 CATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTC 25567
|||||||| ||||| ||| |||||||||||||||| ||||| || || | |||||||
Sbjct 9372682 AATCATGTAGGTGAGCAGAGAGTAGCTGGCGATGTTGAAGGGCACGCCCAGGCCCATGT- 9372740
Query 25568 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACACA 25627
| || |||| || || ||||| || || ||||| ||| |||||| ||||| || |
Sbjct 9372741 CTCCTGACCGCTCATACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCAAA 9372800
Query 25628 TGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGA 25687
|| | ||| || || || || | || | || ||| || |||||||| |||| ||
Sbjct 9372801 GGGCATGGCAGGGTGGGAGGGCCGTGAGCGGGAGGTGTTTTGGATTCCAGGCACACATGA 9372860
Query 25688 TGATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAGCTGATCCA 25747
|||| | ||||| | |||||| |||| || | || ||||| || || |
Sbjct 9372861 TGATTCTTCTGTCATTAGGGTTGGTTTTGATTGTGTCAGTCACCTTCTGCAGTTGGTCTA 9372920
Query 25748 CCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACT 25807
| || | || || || |||| | | || ||| || || || |||| ||||||||
Sbjct 9372921 CTCCTTTGCCTGAATAATCTGAATCCGTATCTTCGTATTCGGCCCCAAAATGCCTCCACT 9372980
Query 25808 GGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCA 25867
| || | ||| || || ||||| |||| |||| ||| || ||| | ||||
Sbjct 9372981 GAAAGCGGTATACTGGGCCTAGATCTC---CTTCTCTGGTGGAGAATCCCAGGCTGTCCA 9373037
Query 25868 AAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGG 25927
| | | ||| ||| ||| ||||||||||||| || || ||||| || ||||| || |
Sbjct 9373038 AGACGCCTCGGGACCCACTGGCGTCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAG 9373097
Query 25928 AGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCGCC 25965
||||||||| || ||| |||||||||| ||| ||
Sbjct 9373098 CGTTTGTGGATCCCTTGATAAACCACAGCAATTCCTCC 9373135
>seq5010
Length=10235142
Score = 109 bits (120), Expect = 4e-19
Identities = 125/168 (74%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832
||| || |||| || || || |||| |||||| || || ||||| ||||| ||||| ||
Sbjct 3044219 CATATCTTTGTATTCGGCCCCAAAATGCCTCCATTGAAAGCCGTAAACCGGGCCTAGATC 3044160
Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTC 25892
||| ||||| ||| || ||| | ||||| ||||||| ||| |||||||||||
Sbjct 3044159 TCCTTCTTCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCGTC 3044100
Query 25893 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940
|||||| || || ||||| || ||||| || | ||||||||| ||
Sbjct 3044099 CCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCC 3044052
Score = 105 bits (116), Expect = 5e-18
Identities = 114/150 (76%), Gaps = 1/150 (1%)
Strand=Plus/Minus
Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565
|| |||||||| ||||| || |||||||||||||||| ||||| || || | ||||||
Sbjct 3047434 GCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGCACGCCCAGGCCCATG 3047375
Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625
| | ||||||| |||||| ||||| || || ||||| ||| |||||| ||||| ||
Sbjct 3047374 T-CTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCA 3047316
Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAG 25655
| || || ||| || || || || || ||
Sbjct 3047315 AAGGGCGTGGCAGGGCGGGAGGGCCATGAG 3047286
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 339990623885715
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |