Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq1473 223 2e-53 seq5010 109 4e-19 >seq1473 Length=14027634 Score = 223 bits (246), Expect = 2e-53 Identities = 398/578 (69%), Gaps = 5/578 (1%) Strand=Plus/Plus Query 25388 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTA 25447 |||||||| || || || | | ||||| | ||||| || || ||||| |||||| Sbjct 9372563 GGGAAAGGC-CTTGGTTCTCGCGGAAGCTGCATTTTCAGTGGCTCAGTGTGATTCAGGTA 9372621 Query 25448 GACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGC 25507 | ||| || ||||||| |||||| |||| || || || | || || || | || || Sbjct 9372622 AATGTGTGCATCTCCCAAAGTGTGTACAAGGTCACCTGGCTTCAGGCCTGTGATGTGTGC 9372681 Query 25508 CATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTC 25567 |||||||| ||||| ||| |||||||||||||||| ||||| || || | ||||||| Sbjct 9372682 AATCATGTAGGTGAGCAGAGAGTAGCTGGCGATGTTGAAGGGCACGCCCAGGCCCATGT- 9372740 Query 25568 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACACA 25627 | || |||| || || ||||| || || ||||| ||| |||||| ||||| || | Sbjct 9372741 CTCCTGACCGCTCATACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCAAA 9372800 Query 25628 TGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGA 25687 || | ||| || || || || | || | || ||| || |||||||| |||| || Sbjct 9372801 GGGCATGGCAGGGTGGGAGGGCCGTGAGCGGGAGGTGTTTTGGATTCCAGGCACACATGA 9372860 Query 25688 TGATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAGCTGATCCA 25747 |||| | ||||| | |||||| |||| || | || ||||| || || | Sbjct 9372861 TGATTCTTCTGTCATTAGGGTTGGTTTTGATTGTGTCAGTCACCTTCTGCAGTTGGTCTA 9372920 Query 25748 CCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACT 25807 | || | || || || |||| | | || ||| || || || |||| |||||||| Sbjct 9372921 CTCCTTTGCCTGAATAATCTGAATCCGTATCTTCGTATTCGGCCCCAAAATGCCTCCACT 9372980 Query 25808 GGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCA 25867 | || | ||| || || ||||| |||| |||| ||| || ||| | |||| Sbjct 9372981 GAAAGCGGTATACTGGGCCTAGATCTC---CTTCTCTGGTGGAGAATCCCAGGCTGTCCA 9373037 Query 25868 AAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGG 25927 | | | ||| ||| ||| ||||||||||||| || || ||||| || ||||| || | Sbjct 9373038 AGACGCCTCGGGACCCACTGGCGTCCCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAG 9373097 Query 25928 AGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCGCC 25965 ||||||||| || ||| |||||||||| ||| || Sbjct 9373098 CGTTTGTGGATCCCTTGATAAACCACAGCAATTCCTCC 9373135 >seq5010 Length=10235142 Score = 109 bits (120), Expect = 4e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||| || |||| || || || |||| |||||| || || ||||| ||||| ||||| || Sbjct 3044219 CATATCTTTGTATTCGGCCCCAAAATGCCTCCATTGAAAGCCGTAAACCGGGCCTAGATC 3044160 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTC 25892 ||| ||||| ||| || ||| | ||||| ||||||| ||| ||||||||||| Sbjct 3044159 TCCTTCTTCTCTGGTGGAGAATCCCAGGCTGTCCAAGAAGTCTCGGGACCCATTGGCGTC 3044100 Query 25893 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 |||||| || || ||||| || ||||| || | ||||||||| || Sbjct 3044099 CCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCGTTTGTGGATCC 3044052 Score = 105 bits (116), Expect = 5e-18 Identities = 114/150 (76%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| ||||| || |||||||||||||||| ||||| || || | |||||| Sbjct 3047434 GCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAGGGCACGCCCAGGCCCATG 3047375 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 | | ||||||| |||||| ||||| || || ||||| ||| |||||| ||||| || Sbjct 3047374 T-CTCCCGACCGCTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACGTAGAACTGGCA 3047316 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 | || || ||| || || || || || || Sbjct 3047315 AAGGGCGTGGCAGGGCGGGAGGGCCATGAG 3047286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339990623885715