Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23]
35,455 sequences; 1,992,663,268 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq1689 152 7e-32
seq4562 87.8 3e-12
>seq1689
Length=20430167
Score = 152 bits (168), Expect = 7e-32
Identities = 168/224 (75%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693
||||| |||| | || ||| |||||||||||| || | || || ||||| ||||||
Sbjct 184658 GTCTGGAACAACCGCTCATCATCCCATTCTGGATGCTCCTGCTTAAGCACATCACACACT 184599
Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753
|| |||||||||| |||||||| || ||||||||||| |||||||||||||| |||||
Sbjct 184598 CTATTGTGTTCCCGCAGCCAGATTGTGGCGTACATCATCAGACCAGGCACCAGACCAAAG 184539
Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813
||| || || ||||| | ||| | ||| || || | ||||| |||||||| |
Sbjct 184538 AGCTCCTGCCCCACAGCAAACTGCAGGTGTTCAGGAACATGAGGAGGGTAGATCATCTTG 184479
Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9857
||||| ||||||||| | || ||||||| || || ||||
Sbjct 184478 ACCTGAGTATCTTTGACTGTTGGAGGATACACCTCTCCACCAAT 184435
Score = 107 bits (118), Expect = 3e-18
Identities = 145/202 (72%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087
|||||||||||| ||||||||| ||||| || || |||||| ||| ||| | ||
Sbjct 183563 TCTTACCCCATGGTTCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 183504
Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147
|||||| || ||||| || ||| |||| || |||||||| | || || |||||||| ||
Sbjct 183503 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTACCCTGGGGGTC 183444
Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207
|| |||| | || | ||||| |||||||||||| | | | ||| || || |
Sbjct 183443 AGGGATGAACTTTCTTCTCAGAAGTAATTTTTCCACAACTTCTTTTGAATCAGGAAGCTC 183384
Query 10208 ttttttACCTGGTGAACGAGAA 10229
||| | |||| || |||||
Sbjct 183383 TTTCCTCCCTGAAAAATGAGAA 183362
Score = 100 bits (110), Expect = 4e-16
Identities = 114/153 (75%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346
|||||||| || || | || ||||| || |||| || || ||||| ||| ||||
Sbjct 183038 TCACCTTTCACACCCATGGGTGTTGGGCAGTCGTCAGCCACAGGAGGAAGAGCTCTTGTA 182979
Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406
|||||||||||||| || || |||||||||||| || | |||| || ||||| |
Sbjct 182978 TAATAGGAGAGATTAGAAAAGGCTTCCCAGCTTTTATAGCCATAGTGTGCATTGTAAGTT 182919
Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439
|| ||||||||||||| || ||||| |||||
Sbjct 182918 GGTGGGCTGTCAATCAGATGTGATCTTGCTGAA 182886
>seq4562
Length=4329500
Score = 87.8 bits (96), Expect = 3e-12
Identities = 105/141 (74%), Gaps = 4/141 (3%)
Strand=Plus/Plus
Query 10026 GTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCC 10083
|| || ||||| || |||| | | || |||||| | || || || |||| | |||
Sbjct 3802072 GTACTCACCCCGTGGCCCAATGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTTT 3802129
Query 10084 TAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGG 10143
| || |||||||| ||||| ||||| |||| ||||||||||| | ||||||||| ||||
Sbjct 3802130 TGAAGAACTGGTGAGTGAAGTGTTGCGCAAAGAAGGCAAACATGAGGTTGGTGCCTTGGG 3802189
Query 10144 GATCGGGAGTGAAGGTCCTCC 10164
| || || |||| ||||||
Sbjct 3802190 GGTCAGGTATGAACTTCCTCC 3802210
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708210790665200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |