Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq1689 152 7e-32 seq4562 87.8 3e-12 >seq1689 Length=20430167 Score = 152 bits (168), Expect = 7e-32 Identities = 168/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| |||| | || ||| |||||||||||| || | || || ||||| |||||| Sbjct 184658 GTCTGGAACAACCGCTCATCATCCCATTCTGGATGCTCCTGCTTAAGCACATCACACACT 184599 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 || |||||||||| |||||||| || ||||||||||| |||||||||||||| ||||| Sbjct 184598 CTATTGTGTTCCCGCAGCCAGATTGTGGCGTACATCATCAGACCAGGCACCAGACCAAAG 184539 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 ||| || || ||||| | ||| | ||| || || | ||||| |||||||| | Sbjct 184538 AGCTCCTGCCCCACAGCAAACTGCAGGTGTTCAGGAACATGAGGAGGGTAGATCATCTTG 184479 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9857 ||||| ||||||||| | || ||||||| || || |||| Sbjct 184478 ACCTGAGTATCTTTGACTGTTGGAGGATACACCTCTCCACCAAT 184435 Score = 107 bits (118), Expect = 3e-18 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| ||||||||| ||||| || || |||||| ||| ||| | || Sbjct 183563 TCTTACCCCATGGTTCAGTCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 183504 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| || ||||| || ||| |||| || |||||||| | || || |||||||| || Sbjct 183503 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTACCCTGGGGGTC 183444 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207 || |||| | || | ||||| |||||||||||| | | | ||| || || | Sbjct 183443 AGGGATGAACTTTCTTCTCAGAAGTAATTTTTCCACAACTTCTTTTGAATCAGGAAGCTC 183384 Query 10208 ttttttACCTGGTGAACGAGAA 10229 ||| | |||| || ||||| Sbjct 183383 TTTCCTCCCTGAAAAATGAGAA 183362 Score = 100 bits (110), Expect = 4e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||| || || | || ||||| || |||| || || ||||| ||| |||| Sbjct 183038 TCACCTTTCACACCCATGGGTGTTGGGCAGTCGTCAGCCACAGGAGGAAGAGCTCTTGTA 182979 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 |||||||||||||| || || |||||||||||| || | |||| || ||||| | Sbjct 182978 TAATAGGAGAGATTAGAAAAGGCTTCCCAGCTTTTATAGCCATAGTGTGCATTGTAAGTT 182919 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || ||||||||||||| || ||||| ||||| Sbjct 182918 GGTGGGCTGTCAATCAGATGTGATCTTGCTGAA 182886 >seq4562 Length=4329500 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/141 (74%), Gaps = 4/141 (3%) Strand=Plus/Plus Query 10026 GTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCC 10083 || || ||||| || |||| | | || |||||| | || || || |||| | ||| Sbjct 3802072 GTACTCACCCCGTGGCCCAATGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTTT 3802129 Query 10084 TAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGG 10143 | || |||||||| ||||| ||||| |||| ||||||||||| | ||||||||| |||| Sbjct 3802130 TGAAGAACTGGTGAGTGAAGTGTTGCGCAAAGAAGGCAAACATGAGGTTGGTGCCTTGGG 3802189 Query 10144 GATCGGGAGTGAAGGTCCTCC 10164 | || || |||| |||||| Sbjct 3802190 GGTCAGGTATGAACTTCCTCC 3802210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708210790665200