Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq3552 96.9 3e-15 seq4088 87.8 2e-12 >seq3552 Length=199577 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| | ||||| ||||| ||| || || ||||||| | || || ||| | | Sbjct 80965 ATGCAGGTCTTTGTGAAGACCCTGATGGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 80906 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| | ||| | || |||| |||| || ||||| || || || ||||||||| Sbjct 80905 GACACCACTGAG--AATGTCAAAGCTAAAATCCAA-GACAAGGAGGGCATCCCACCTGAC 80849 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || |||| | |||||||| ||||||| | || |||| ||||||| || ||| Sbjct 80848 CAGCAGCATCTGATTTTTGCGAGCAAACAGCTGGAGGATGGTCGCACTCCATCAGACTAC 80789 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| ||||| ||||| || || || ||||| Sbjct 80788 AATATTCAGAAAGAGTCCACCCTGCACTTGGTGCT 80754 >seq4088 Length=12000580 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 || || || ||||| ||||| |||| || || | ||||| |||| || ||||| || Sbjct 9606616 ATACAGATCTTTGTGAAGACCCTGACAGGCAAGACTATCACCCTCGAGGTTGAGTCCACT 9606557 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| | || | || |||| | || || ||||| || || || ||||||||| Sbjct 9606556 GACACCAATAAG--AATGTCAAAGCTACAA-TCTAAGACAAGGAGGGCATCCCACCTGAC 9606500 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || |||| | ||||| | || ||||| | || |||| || ||| || |||||| Sbjct 9606499 CAGCAGCATCTGATTTTCACGGGGAAACAGCTGGAGGATGGCCGTACTCTGTCAGATTAC 9606440 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || |||| ||||| ||||| | |||| |||||| Sbjct 9606439 GATGTTCAGAAAGAGTCCACCTTGCATTCAGTGCT 9606405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433140755585825