Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2669 109 5e-19 seq3552 105 6e-18 seq8041 100 2e-16 seq4088 93.3 4e-14 seq459 82.4 6e-11 >seq2669 Length=6508339 Score = 109 bits (120), Expect = 5e-19 Identities = 153/214 (71%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | || || || || |||| || || || || ||| Sbjct 4561889 AGATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCA 4561948 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| || || ||||| ||||| || ||||||||||| || ||||| |||| Sbjct 4561949 GTGACACCACTGAGAATGTCAAAGCTAAAATCCAGGACAAGGAGGGCATCCCACCTGATC 4562008 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || | ||| || |||| ||||||||| |||||||| | |||| | || || |||| Sbjct 4562009 AGCAGCATCTGATTTTTGTGGGCAAACAGCTAGAGGATGGCTGCACTCTGTCAGACTACA 4562068 Query 22397 ACA---TTCAAAAAGAATCCACCATACATTTAGT 22427 | | |||| || || |||||| | || ||||| Sbjct 4562069 ATATTCTTCAGAAGGAGTCCACCCTGCACTTAGT 4562102 >seq3552 Length=199577 Score = 105 bits (116), Expect = 6e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| | ||||| || || | | || || || |||| ||||| || || ||| Sbjct 80967 AGATGCAGGTCTTTGTGAAGACCCTGATGGGCAAGACCATCACCCTTGAGGTTGAGCCCA 80908 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| || || ||||| ||||| |||||||||||||| || ||||| || | Sbjct 80907 GTGACACCACTGAGAATGTCAAAGCTAAAATCCAAGACAAGGAGGGCATCCCACCTGACC 80848 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || | ||| || ||||| |||||||| | |||||| ||||| || || |||| Sbjct 80847 AGCAGCATCTGATTTTTGCGAGCAAACAGCTGGAGGATGGTCGCACTCCATCAGACTACA 80788 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGT 22427 | ||||| ||||| |||||| | || || || Sbjct 80787 ATATTCAGAAAGAGTCCACCCTGCACTTGGT 80757 >seq8041 Length=9355897 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || ||||| || |||| || || ||||| ||| Sbjct 8398741 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 8398682 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || |||||||||||||| || || || || || Sbjct 8398681 GACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 8398622 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || |||||| | || ||| |||||| | || || |||||| Sbjct 8398621 CAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 8398562 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || |||||||| | || || || |||| || | |||||| Sbjct 8398561 ATCCAGAAGGAATCCACTCTGCACTTGGTCCTGCGCTTAAGGGGAGGT 8398514 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || ||||| || |||| || || ||||| ||| Sbjct 8399197 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 8399138 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || |||||||||||||| || || || || || Sbjct 8399137 GACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 8399078 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || |||||||| |||||| | || ||| |||||| | || || |||||| Sbjct 8399077 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 8399018 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| |||||| Sbjct 8399017 ATCCAGAAAGAGTCCACC 8399000 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || ||||| || |||| || || ||||| ||| Sbjct 8399425 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 8399366 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || |||||||||||||| || || || || || Sbjct 8399365 GACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 8399306 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || |||||||| |||||| | || ||| |||||| | || || |||||| Sbjct 8399305 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 8399246 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| |||||| Sbjct 8399245 ATCCAGAAAGAGTCCACC 8399228 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || ||||| || |||| || || ||||| ||| Sbjct 8399653 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 8399594 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || |||||||||||||| || || || || || Sbjct 8399593 GACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 8399534 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || |||||||| |||||| | || ||| |||||| | || || |||||| Sbjct 8399533 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 8399474 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| |||||| Sbjct 8399473 ATCCAGAAAGAGTCCACC 8399456 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || ||||| || |||| || || ||||| ||| Sbjct 8399881 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 8399822 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || |||||||||||||| || || || || || Sbjct 8399821 GACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 8399762 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || |||||||| |||||| | || ||| |||||| | || || |||||| Sbjct 8399761 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 8399702 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| |||||| Sbjct 8399701 ATCCAGAAAGAGTCCACC 8399684 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || ||||| || |||| || || ||||| ||| Sbjct 8398969 ATGCAGATCTTCGTGAAGACCTTGACGGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 8398910 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || |||||||||||||| || || || || || Sbjct 8398909 GACACCATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 8398850 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || |||||||| |||||| | || ||| |||||| | || || |||||| Sbjct 8398849 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 8398790 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || |||||| Sbjct 8398789 ATCCAGAAGGAGTCCACC 8398772 >seq4088 Length=12000580 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 |||| || || ||||| || || | || || || || |||| || || || || ||| Sbjct 9606618 AGATACAGATCTTTGTGAAGACCCTGACAGGCAAGACTATCACCCTCGAGGTTGAGTCCA 9606559 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | || ||| | || ||||| | ||| ||||||||||||| || ||||| || | Sbjct 9606558 CTGACACCAATAAGAATGTCAAAGCTACAATCTAAGACAAGGAGGGCATCCCACCTGACC 9606499 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || | ||| || || | || |||||| | |||||| ||| || | || |||||| Sbjct 9606498 AGCAGCATCTGATTTTCACGGGGAAACAGCTGGAGGATGGCCGTACTCTGTCAGATTACG 9606439 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 | |||| ||||| |||||| | |||| ||| | || ||| | || || Sbjct 9606438 ATGTTCAGAAAGAGTCCACCTTGCATTCAGTGCTTCGTTTGGGAGGCGG 9606390 >seq459 Length=3563100 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || ||||| ||| Sbjct 2214119 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 2214178 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || || || |||||||| || || || || || Sbjct 2214179 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCTCCTGACCAG 2214238 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || || ||||| ||| | || ||| |||||| | || ||||||||| Sbjct 2214239 CAGAGGCTCATCTTCGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 2214298 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| || ||| Sbjct 2214299 ATCCAGAAAGAGTCGACC 2214316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419546632252075