Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Camelus_20bactrianus_20[refseq_20GCF_5F000767855.1_202014-10-23] 35,455 sequences; 1,992,663,268 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq6502 87.8 3e-12 seq4475 84.2 4e-11 >seq6502 Length=3845251 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/125 (77%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||||||| |||| || || || |||||||| || || | || || || || |||||| Sbjct 1108098 GTAGCCTTTGCCGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCAATATTCTGG 1108039 Query 42768 CTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 |||||| || ||| | |||||| || ||||| || || || ||||| || ||||| || Sbjct 1108038 CTCAAGAAGCGAGGACT-GATGCCGGGCCTCACATTTTCCAATGAACTTATTAGCAGAGA 1107980 Query 42827 CGAGG 42831 ||||| Sbjct 1107979 CGAGG 1107975 >seq4475 Length=11054148 Score = 84.2 bits (92), Expect = 4e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || || ||| |||| |||||| | || || || || || |||||||| ||| | || || Sbjct 3068460 GGGGAAAGGGTGGTGGCCTTTGCTGCTGTGGAAGGAATTTTCTTCTCAGGCTCTTTTGCT 3068401 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 | || || ||||| ||| ||| |||| | ||||| || ||||| || || || ||||| Sbjct 3068400 GCTATATTTTGGCTGAAGAAGAGAGGTCTT-ATGCCTGGCCTCACTTTTTCCAATGAACT 3068342 Query 42815 CATCAGCAGGGACGA 42829 ||||||||| || || Sbjct 3068341 CATCAGCAGAGATGA 3068327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943920680670800